EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  133 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            K+L+IG+S VGKS LLLRF DD++     +TIGVDFK++T+ +DG   KL IWDTAGQERFRT+T SYYRGA G+I+VYDVT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  133 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            K+L+IG+S VGKS LLLRF DD++     +TIGVDFK++T+ +DG   KL IWDTAGQERFRT+T SYYRGA G+I+VYDVT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  133 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            K+L+IG+S VGKS LLLRF DD++     +TIGVDFK++T+ +DG   KL IWDTAGQERFRT+T SYYRGA G+I+VYDVT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  133 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            K+L+IG+S VGKS LLLRF DD++     +TIGVDFK++T+ +DG   KL IWDTAGQERFRT+T SYYRGA G+I+VYDVT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  133 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            K+L+IG+S VGKS LLLRF DD++     +TIGVDFK++T+ +DG   KL IWDTAGQERFRT+T SYYRGA G+I+VYDVT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  133 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            K+L+IG+S VGKS LLLRF DD++     +TIGVDFK++T+ +DG   KL IWDTAGQERFRT+T SYYRGA G+I+VYDVT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.767e-26
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  RT++++G+T+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT
Sbjct:    8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT 95          

HSP 2 Score: 21.1718 bits (43), Expect = 4.767e-26
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKK 475
            +F+NV+ WL E+ R   DS   +   G K
Sbjct:   99 TFENVSRWLKEL-RDHADSNIVIMLIGNK 126          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
RAB18_RAT4.601e-2665.85Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB4.601e-2665.85Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE4.601e-2665.85Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN4.601e-2665.85Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_CHICK4.601e-2665.85Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_BOVIN4.601e-2665.85Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RAA2A_ARATH4.767e-2663.64Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11B_RAT7.847e-2663.64Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE7.847e-2663.64Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN7.847e-2663.64Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
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