EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            + ++YDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  RT+++DGK +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT
Sbjct:    6 VEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.339e-25
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +EYDYLFKL+LIGDS VGKS LL RF  + +     STIGV+F  +++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT
Sbjct:    8 DEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.363e-25
Identity = 48/88 (54.55%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + +++DG  +KLQ+WDTAGQERFR++T +YYR AH ++++YDVT
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT 147          

HSP 2 Score: 22.3274 bits (46), Expect = 1.363e-25
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2
Query:  389 SFDNVTHWLNEI 424
            SFDN+  WL EI
Sbjct:  151 SFDNIQAWLTEI 162          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.748e-25
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R V +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.748e-25
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R V +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.781e-25
Identity = 53/91 (58.24%), Postives = 72/91 (79.12%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            + +EY YLFK++LIGDS VGKS +L RF  + +     STIGV+F  ++++++GKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T
Sbjct:    5 VDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95          

HSP 2 Score: 23.0978 bits (48), Expect = 1.781e-25
Identity = 13/30 (43.33%), Postives = 16/30 (53.33%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKKA 478
            SFDNV  WL E+ R   DS   +   G K+
Sbjct:   99 SFDNVHRWLREL-RDHADSSIVIMMVGNKS 127          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.283e-25
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.283e-25
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
RB11A_CANFA7.847e-2663.64Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN7.847e-2663.64Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAA1B_ARATH7.847e-2661.54Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11E_LOTJA1.339e-2564.04Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAB26_HUMAN1.363e-2554.55Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB2B_MOUSE1.748e-2563.22Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN1.748e-2563.22Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RGP2_ORYSJ1.781e-2558.24Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPTV4_VOLCA2.283e-2562.07GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE2.283e-2562.07GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
back to top