EY684808 | Citrus Genome Database

Overview


Name	EY684808
Unique Name	EY684808
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	873

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.676e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 27.335 bits (59), Expect = 2.676e-44
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DRESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.676e-44
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRT+TSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.676e-44
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.716e-44
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT EL+GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91

HSP 2 Score: 28.8758 bits (63), Expect = 7.716e-44
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR 430
            + DSF+NV  WL EIDR
Sbjct:   92 DQDSFNNVKQWLQEIDR 108

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.226e-43
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQER RTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.226e-43
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.420e-42
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ LDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 25.7942 bits (55), Expect = 1.420e-42
Identity = 12/28 (42.86%), Postives = 16/28 (57.14%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            SF+NV  W+ EI R A DS  ++    K
Sbjct:   95 SFNNVKQWMQEIQRYACDSVTRLLVGNK 122

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.141e-42
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M++EYDYLFKLLLIG+S VGKSCLLLRF+DD+Y + YISTIGVDFKI+TVELDGKT+KLQIWDTAGQERFRTITSSYYRG+HGIIIVYDVT
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT 91

HSP 2 Score: 26.1794 bits (56), Expect = 3.141e-42
Identity = 12/31 (38.71%), Postives = 17/31 (54.84%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + +SF+ V  WL EIDR A  +  K+    K
Sbjct:   92 DQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.005e-41
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ +Y YLFKLLLIGDS VGKSCLLLRFADD+Y +S+ISTIGVDFKIRT+EL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 25.7942 bits (55), Expect = 2.005e-41
Identity = 12/28 (42.86%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            +F+NV  WL EIDR A ++  K+    K
Sbjct:   95 TFENVRQWLQEIDRFACENVNKLLVGNK 122

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.828e-40
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YD LFKLLLIGDS VGKSCLLLRFADD Y +SYISTIGVDFKI+T+ELDGKTIKLQIWDTAGQERF TITSSYYRGAHG ++VYDVT
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.828e-40
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESYANVKQWLQEIDRHASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.348e-39
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ E+D+ FK+LLIGDS VGKSCLLLRFADDS+ D++ISTIGVDFKI+T+ LDGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD T
Sbjct:    3 MAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCT 93

HSP 2 Score: 28.1054 bits (61), Expect = 2.348e-39
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + DSF NV  W+ EIDR A ++  K+    K
Sbjct:   94 DQDSFTNVKQWMGEIDRYACENVNKLLVGNK 124

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.540e-38
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1

Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            EYD L K+L+IGDS VGKSC+LLRFAD+ + DSYISTIGVDF IRT+ELDGK IKLQIWDTAGQERF+TIT+SYYRGAHG+IIVYD+T
Sbjct:   29 EYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDIT 116

HSP 2 Score: 28.1054 bits (61), Expect = 2.540e-38
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 2

Query:  383 MDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            MDSF+++  WL ++DR A+ S  K+    K
Sbjct:  118 MDSFNSIKRWLIDVDRFASPSVLKLIVGNK 147

The following BLAST results are available for this feature:

BLAST of EY684808 vs. ExPASy Swiss-Prot

BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397


Match Name	E-value	Identity	Description
RAB1B_MACFA	2.676e-44	91.21	Ras-related protein Rab-1B OS=Macaca fascicularis ...	[more]
RAB1B_RAT	2.676e-44	90.11	Ras-related protein Rab-1B OS=Rattus norvegicus GN...	[more]
YPT1_SCHPO	7.716e-44	90.11	GTP-binding protein ypt1 OS=Schizosaccharomyces po...	[more]
RAB1B_PIG	2.226e-43	90.11	Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ...	[more]
RAB1B_DICDI	1.420e-42	89.01	Ras-related protein Rab-1B OS=Dictyostelium discoi...	[more]
YPT1_YEAST	3.141e-42	86.81	GTP-binding protein YPT1 OS=Saccharomyces cerevisi...	[more]
RAB1A_DICDI	2.005e-41	86.81	Ras-related protein Rab-1A OS=Dictyostelium discoi...	[more]
RAB1C_HUMAN	2.828e-40	84.62	Putative Ras-related protein Rab-1C OS=Homo sapien...	[more]
RAB1D_DICDI	2.348e-39	81.32	Ras-related protein Rab-1D OS=Dictyostelium discoi...	[more]
RAB1C_DICDI	2.540e-38	80.68	Ras-related protein Rab-1C OS=Dictyostelium discoi...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC