EY684808 | Citrus Genome Database

Overview


Name	EY684808
Unique Name	EY684808
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	873

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.895e-37
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 1

Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            EYDYLFK+++IGDS  GKS LLLRFAD++Y +SY+STIGVDFKI+TV++D  TIKLQIWDTAGQERFRTITS+YYRGAHGII VYDVT
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVT 90

HSP 2 Score: 26.1794 bits (56), Expect = 7.895e-37
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  389 SFDNVTH-WLNEIDR*ANDSECKV 457
            SFD++T  WL +ID+ A  + CK+
Sbjct:   94 SFDHITETWLQDIDKYATSNVCKL 117

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.895e-37
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 1

Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            EYDYLFK+++IGDS  GKS LLLRFAD++Y +SY+STIGVDFKI+TV++D  TIKLQIWDTAGQERFRTITS+YYRGAHGII VYDVT
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVT 90

HSP 2 Score: 26.1794 bits (56), Expect = 7.895e-37
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  389 SFDNVTH-WLNEIDR*ANDSECKV 457
            SFD++T  WL +ID+ A  + CK+
Sbjct:   94 SFDHITETWLQDIDKYATSNVCKL 117

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.029e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 1

Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +YDYL KLLLIGDS VGKSCLLLRF+D S+  S+I+TIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98

HSP 2 Score: 25.0238 bits (53), Expect = 1.029e-36
Identity = 14/44 (31.82%), Postives = 24/44 (54.55%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS*EHEGQTAPAPG 520
            SF+N+ +W+  I++ A+D+  K+   G KA   E +     A G
Sbjct:  102 SFNNIRNWIRNIEQHASDNVNKILV-GNKADMDESKRAVPTAKG 144

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.029e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 1

Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +YDYL KLLLIGDS VGKSCLLLRF+D S+  S+I+TIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98

HSP 2 Score: 25.0238 bits (53), Expect = 1.029e-36
Identity = 14/44 (31.82%), Postives = 24/44 (54.55%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS*EHEGQTAPAPG 520
            SF+N+ +W+  I++ A+D+  K+   G KA   E +     A G
Sbjct:  102 SFNNIRNWIRNIEQHASDNVNKILV-GNKADMDESKRAVPTAKG 144

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.967e-36
Identity = 69/91 (75.82%), Postives = 84/91 (92.31%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++  SYI+TIGVDFKIRTVE++G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 91

HSP 2 Score: 23.483 bits (49), Expect = 2.967e-36
Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 2

Query:  386 DSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            +SF NV  WL+EI++  +D  C++    K
Sbjct:   94 ESFVNVKRWLHEINQNCDD-VCRILVGNK 121

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.967e-36
Identity = 69/91 (75.82%), Postives = 84/91 (92.31%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++  SYI+TIGVDFKIRTVE++G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 91

HSP 2 Score: 23.483 bits (49), Expect = 2.967e-36
Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 2

Query:  386 DSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            +SF NV  WL+EI++  +D  C++    K
Sbjct:   94 ESFVNVKRWLHEINQNCDD-VCRILVGNK 121

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.967e-36
Identity = 69/91 (75.82%), Postives = 84/91 (92.31%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++  SYI+TIGVDFKIRTVE++G+ +KLQIWDTAGQERFRTITS+YYRG HG+I+VYDVT
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 91

HSP 2 Score: 23.483 bits (49), Expect = 2.967e-36
Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 2

Query:  386 DSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            +SF NV  WL+EI++  +D  C++    K
Sbjct:   94 ESFVNVKRWLHEINQNCDD-VCRILVGNK 121

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.865e-36
Identity = 69/90 (76.67%), Postives = 82/90 (91.11%), Query Frame = 1

Query:  109 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +  YDYL KLLLIGDS VGKSCLLLRF++DS+  S+I+TIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI+++YDVT
Sbjct:    3 TKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVT 92

HSP 2 Score: 23.483 bits (49), Expect = 3.865e-36
Identity = 8/23 (34.78%), Postives = 16/23 (69.57%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*ANDSECKV 457
            SFDNV  W + +++ A+++  K+
Sbjct:   96 SFDNVRTWFSNVEQHASENVYKI 118

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.092e-35
Identity = 71/95 (74.74%), Postives = 84/95 (88.42%), Query Frame = 1

Query:   94 PSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            P+   S  YDYL KLLLIGDS VGKSCLLLRF++DS+  S+I+TIG+DFKIRT+EL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT
Sbjct:    4 PATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.887e-35
Identity = 68/91 (74.73%), Postives = 83/91 (91.21%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 91

HSP 2 Score: 21.9422 bits (45), Expect = 1.887e-35
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AN 439
            SFDN+ +W+  I+  A+
Sbjct:   95 SFDNIKNWIRNIEEHAS 111

The following BLAST results are available for this feature:

BLAST of EY684808 vs. ExPASy Swiss-Prot

BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397


Match Name	E-value	Identity	Description
RAB1_THEPA	7.895e-37	79.55	Ras-related protein Rab-1 OS=Theileria parva GN=ra...	[more]
RAB1_THEAN	7.895e-37	79.55	Ras-related protein Rab-1 OS=Theileria annulata GN...	[more]
RB1BV_BETVU	1.029e-36	79.55	Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB...	[more]
ARA3_ARATH	1.029e-36	79.55	Ras-related protein ARA-3 OS=Arabidopsis thaliana ...	[more]
RAB35_RAT	2.967e-36	75.82	Ras-related protein Rab-35 OS=Rattus norvegicus GN...	[more]
RAB35_MOUSE	2.967e-36	75.82	Ras-related protein Rab-35 OS=Mus musculus GN=Rab3...	[more]
RAB35_HUMAN	2.967e-36	75.82	Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3...	[more]
YPT2_SCHPO	3.865e-36	76.67	GTP-binding protein ypt2 OS=Schizosaccharomyces po...	[more]
RAB8A_DICDI	1.092e-35	74.74	Ras-related protein Rab-8A OS=Dictyostelium discoi...	[more]
RAB8B_RAT	1.887e-35	74.73	Ras-related protein Rab-8B OS=Rattus norvegicus GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC