EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.202e-35
Identity = 67/91 (73.63%), Postives = 83/91 (91.21%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 91          

HSP 2 Score: 21.9422 bits (45), Expect = 3.202e-35
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*AN 439
            SFDN+ +W+  I+  A+
Sbjct:   95 SFDNIRNWIRNIEEHAS 111          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.422e-35
Identity = 66/91 (72.53%), Postives = 85/91 (93.41%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DFKIRTVE++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDIT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.432e-35
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRTVELDGK IKLQIWDTAGQERFRTIT++YYRGA GI+ VYD+T
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDIT 91          

HSP 2 Score: 21.9422 bits (45), Expect = 5.432e-35
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*AN 439
            SFDN+ +W+  I+  A+
Sbjct:   95 SFDNIKNWIRNIEEHAS 111          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.081e-35
Identity = 66/91 (72.53%), Postives = 84/91 (92.31%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++  +YISTIG+DFKIRTVE++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDIT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.210e-35
Identity = 65/88 (73.86%), Postives = 78/88 (88.64%), Query Frame = 1
Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +YD L KLLL+GDS VGKSCLLLRF DD +  S+I+TIG+DFKI+ V++DGK +KLQIWDTAGQERFRTITS+YYRGA GII+VYD+T
Sbjct:    9 DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDIT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 9.210e-35
Identity = 10/28 (35.71%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            SF+NV +W+  I++ A+D+  K+    K
Sbjct:  100 SFNNVRNWMRNIEQHASDNVNKILVGNK 127          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.208e-34
Identity = 65/91 (71.43%), Postives = 85/91 (93.41%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DFKIRTV+++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDIT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.578e-34
Identity = 67/91 (73.63%), Postives = 82/91 (90.11%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YDYLFKLLLIGDS VGK+C L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.578e-34
Identity = 65/91 (71.43%), Postives = 84/91 (92.31%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++  +YISTIG+DFKIRTV+++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDIT 91          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.691e-34
Identity = 68/87 (78.16%), Postives = 80/87 (91.95%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD+L KLLLIGDS VGKSCLLLRF+D S+  S+I+TIG+DFKIRT+EL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.691e-34
Identity = 64/91 (70.33%), Postives = 85/91 (93.41%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DF+IRTV+++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDIT 91          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
RAB8A_BOVIN3.202e-3573.63Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB13_MESAU5.422e-3572.53Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB8_DISOM5.432e-3575.82Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB13_RAT7.081e-3572.53Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
YPTV2_VOLCA9.210e-3573.86GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB13_HUMAN1.208e-3471.43Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB8A_CHICK1.578e-3473.63Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB13_MOUSE1.578e-3471.43Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB8B_DICDI2.691e-3478.16Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB13_BOVIN2.691e-3470.33Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
back to top