EY684808 | Citrus Genome Database

Overview


Name	EY684808
Unique Name	EY684808
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	873

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.868e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92

HSP 2 Score: 25.409 bits (54), Expect = 5.868e-34
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+N++ WL  ID  AN+
Sbjct:   96 SFENISKWLRNIDEHANE 113

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.868e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92

HSP 2 Score: 25.409 bits (54), Expect = 5.868e-34
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+N++ WL  ID  AN+
Sbjct:   96 SFENISKWLRNIDEHANE 113

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.868e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92

HSP 2 Score: 25.409 bits (54), Expect = 5.868e-34
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+N++ WL  ID  AN+
Sbjct:   96 SFENISKWLRNIDEHANE 113

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.868e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92

HSP 2 Score: 25.409 bits (54), Expect = 5.868e-34
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+N++ WL  ID  AN+
Sbjct:   96 SFENISKWLRNIDEHANE 113

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.643e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92

HSP 2 Score: 25.409 bits (54), Expect = 7.643e-34
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+N++ WL  ID  AN+
Sbjct:   96 SFENISKWLRNIDEHANE 113

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.865e-33
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+D KI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92

HSP 2 Score: 25.409 bits (54), Expect = 2.865e-33
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+N++ WL  ID  AN+
Sbjct:   96 SFENISKWLRNIDEHANE 113

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.731e-33
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTI +DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92

HSP 2 Score: 25.7942 bits (55), Expect = 3.731e-33
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+N++ WL  ID+ AN+
Sbjct:   96 SFENISKWLRNIDQHANE 113

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.371e-32
Identity = 59/91 (64.84%), Postives = 76/91 (83.52%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            MS +Y++LFK + +GDS VGKS +LLRF +D++ +SYISTIGVDFKI+TV ++GK IKLQIWDTAGQERFR   +S YRG H +++VYDVT
Sbjct:    1 MSKKYEHLFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.371e-32
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*ANDSECKV 457
            SF+NV  W+ EI+R A D+  K+
Sbjct:   95 SFENVAKWIQEIERYARDNVIKM 117

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.085e-32
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = 1

Query:  109 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            S  YD + KLLL+GDS VGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVT
Sbjct:    8 SRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVT 97

HSP 2 Score: 21.1718 bits (43), Expect = 3.085e-32
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = 2

Query:  389 SFDNVTHWLNEIDR*AND 442
            SF+NV +W   + + AN+
Sbjct:  101 SFENVENWFQTVTQHANE 118

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.132e-31
Identity = 61/87 (70.11%), Postives = 78/87 (89.66%), Query Frame = 1

Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD + K+LLIGDS VGKSCLL+RF +D +  S+I+TIG+DFKI+TV+++GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVT
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT 103

The following BLAST results are available for this feature:

BLAST of EY684808 vs. ExPASy Swiss-Prot

BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397


Match Name	E-value	Identity	Description
RAB10_PONAB	5.868e-34	74.71	Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1...	[more]
RAB10_MOUSE	5.868e-34	74.71	Ras-related protein Rab-10 OS=Mus musculus GN=Rab1...	[more]
RAB10_HUMAN	5.868e-34	74.71	Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1...	[more]
RAB10_CANFA	5.868e-34	74.71	Ras-related protein Rab-10 OS=Canis familiaris GN=...	[more]
RAB10_DISOM	7.643e-34	74.71	Ras-related protein Rab-10 OS=Discopyge ommata PE=...	[more]
RAB10_CHICK	2.865e-33	73.56	Ras-related protein Rab-10 OS=Gallus gallus GN=RAB...	[more]
RAB10_RAT	3.731e-33	73.56	Ras-related protein Rab-10 OS=Rattus norvegicus GN...	[more]
RABA_DICDI	2.371e-32	64.84	Ras-related protein RabA OS=Dictyostelium discoide...	[more]
SEC4_CANAL	3.085e-32	70.00	Ras-related protein SEC4 OS=Candida albicans GN=SE...	[more]
SEC4_YEAST	2.132e-31	70.11	Ras-related protein SEC4 OS=Saccharomyces cerevisi...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC