EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.132e-31
Identity = 61/87 (70.11%), Postives = 78/87 (89.66%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD + K+LLIGDS VGKSCLL+RF +D +  S+I+TIG+DFKI+TV+++GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVT
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT 103          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.132e-31
Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD L KLLLIGDS VGKSCLLLRF +D +  S+I+TIG+DFKIRT+++  + +KLQ+WDTAGQERFRTIT++YYRGA GI++VYDVT
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVT 94          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.252e-30
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT*DGQLR*CHALVE*D*QIGK*Q*MQSIYVGKKGD*LRTRGTDRTSTRALAR 531
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+E+DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ +   +     V  D      + +Q I +G K D  + R   R   + LAR
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVS-DVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAR 141          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.170e-29
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT*DGQLR*CHALVE*D*QIGK*Q*MQSIYVGKKGD*LRTRGTDRTSTRALAR 531
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+E+DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ +   +     V  D      + +Q I +G K D  + R   R   + LA+
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVS-DVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAK 141          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.170e-29
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT*DGQLR*CHALVE*D*QIGK*Q*MQSIYVGKKGD*LRTRGTDRTSTRALAR 531
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+E+DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ +   +     V  D      + +Q I +G K D  + R   R   + LA+
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVS-DVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAK 141          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.606e-29
Identity = 59/102 (57.84%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   76 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   12 AQDARFGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 113          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.606e-29
Identity = 59/102 (57.84%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   76 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   12 AQDARFGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 113          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.606e-29
Identity = 67/142 (47.18%), Postives = 95/142 (66.90%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT*DGQLR*CHALVE*D*QIGK*Q*MQSIYVGKKGD*LRTRGTDRTSTRALAR 531
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+++DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ +   +     V  D      + +Q I +G K D  + R   R   + LA+
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVS-DVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAK 141          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.404e-29
Identity = 59/102 (57.84%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   76 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   12 AQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 113          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 3.404e-29
Identity = 59/102 (57.84%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   76 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   12 AQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 113          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
SEC4_CANGA2.132e-3170.11Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RYL1_YARLI2.132e-3170.11Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB15_BOVIN5.252e-3048.59Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB15_RAT1.170e-2947.89Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN1.170e-2947.89Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB3C_RAT2.606e-2957.84Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE2.606e-2957.84Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB15_MOUSE2.606e-2947.18Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB3C_HUMAN3.404e-2957.84Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN3.404e-2957.84Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
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