EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 55/87 (63.22%), Postives = 75/87 (86.21%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT
Sbjct:   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVT 104          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 57/100 (57.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   82 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 57/100 (57.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   82 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 57/100 (57.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   82 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 57/100 (57.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   82 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 57/100 (57.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   82 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.689e-28
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   76 SQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            S+    P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+
Sbjct:    5 SEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.689e-28
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   76 SQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            S+    P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+
Sbjct:    5 SEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.689e-28
Identity = 53/87 (60.92%), Postives = 76/87 (87.36%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.206e-28
Identity = 55/94 (58.51%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   94 PSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 375
            P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+
Sbjct:   11 PRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
RAB3_DROME1.293e-2863.22Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3A_RAT1.293e-2857.00Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG1.293e-2857.00Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE1.293e-2857.00Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA1.293e-2857.00Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN1.293e-2857.00Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3D_RAT1.689e-2856.00GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3D_MOUSE1.689e-2856.00Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3A_BOVIN1.689e-2860.92Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB3D_HUMAN2.206e-2858.51Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
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