EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            + +DY FK+LL+GDS VGKSC+L RF    + +S  STIGVDFK++ +  DGK  KL IWDTAGQERFRT+TSSYYRGA GII VYDVT
Sbjct:    4 DSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVT 92          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.915e-28
Identity = 53/87 (60.92%), Postives = 74/87 (85.06%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FKLL+IG+SSVGK+  L R+ DDS+  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.915e-28
Identity = 53/87 (60.92%), Postives = 75/87 (86.21%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.915e-28
Identity = 53/87 (60.92%), Postives = 75/87 (86.21%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.915e-28
Identity = 53/87 (60.92%), Postives = 75/87 (86.21%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.915e-28
Identity = 53/87 (60.92%), Postives = 75/87 (86.21%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.915e-28
Identity = 53/87 (60.92%), Postives = 75/87 (86.21%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 105          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28
Identity = 53/94 (56.38%), Postives = 74/94 (78.72%), Query Frame = 1
Query:   97 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            ++ +   +DYLFK++LIGDS+VGK+C++  F    Y+++  +TIGVDF +R +E+DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T
Sbjct:    7 ARTVDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLT 100          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.084e-28
Identity = 55/106 (51.89%), Postives = 84/106 (79.25%), Query Frame = 1
Query:   67 NGPSQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            NGP Q S+ PS   + + YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + +++DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T
Sbjct:   47 NGPPQ-SIRPSLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT 151          

HSP 2 Score: 24.6386 bits (52), Expect = 9.084e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  386 DSFDNVTHWLNEI 424
            DSFDN+  WL EI
Sbjct:  154 DSFDNIQAWLTEI 166          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.143e-28
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            E D  +K+LLIGDS VGK+ ++ RF+DD++ +  + TIGV+FK++ V++DGK + L IWDTAGQE+FR + SSYYRGAHGII+ YDVT
Sbjct:    2 EEDKQYKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVT 89          

HSP 2 Score: 30.0314 bits (66), Expect = 9.143e-28
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  386 DSFDNVTHWLNEIDR*ANDS 445
            +SFDN+ +WLNE++  AN S
Sbjct:   92 ESFDNLNYWLNEVENFANRS 111          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
YPTV3_VOLCA2.882e-2866.29GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
RAB3_CAEEL4.915e-2860.92Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3B_RAT4.915e-2860.92Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3B_MOUSE4.915e-2860.92Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU4.915e-2860.92Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_HUMAN4.915e-2860.92Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3B_BOVIN4.915e-2860.92Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB19_BOVIN8.384e-2856.38Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAB26_MOUSE9.084e-2851.89Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB18_DICDI9.143e-2859.09Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
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