EY684799

Overview
NameEY684799
Unique NameEY684799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGE 223
            PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL + GYDP YGARP+KR IQQ +EN LA+ IL GE
Sbjct:  765 PLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGE 223
            PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL + GYDP YGARP+KR IQQ +EN LA+ IL GE
Sbjct:  765 PLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 35/74 (47.30%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEF 226
            PL R+QI+ I  +QL R++KR+A+R++ ++++  A+  L ++G+DP YGARP+KR IQ+++EN LA+ IL G+F
Sbjct:  763 PLAREQIAGIAEIQLGRLRKRLAERELSLELSQEALDKLIAVGFDPVYGARPLKRAIQRWIENPLAQLILAGKF 836          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.698e-14
Identity = 36/82 (43.90%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            L ++QI +I  +Q+DR++KR+ ++  ++ ++D A+  L  LGYDP YGARP+KRV+QQ +EN L++ IL G+F     I I+
Sbjct:  767 LKKEQIRNIAIIQIDRIKKRLKEKDYQLTISDDALDYLSELGYDPVYGARPLKRVLQQQLENPLSQKILEGKFVPGSLINIE 848          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGE 223
            PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YGARP+KR IQQ +EN LA+ IL GE
Sbjct:  765 PLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 35/86 (40.70%), Postives = 62/86 (72.09%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVT 265
            L  +QI  IV +Q++ +++R+ADR++ ++++D A + L   GYDP YGARP+KR IQ+ +++ LA  +L G+F++ DT+ +D  V+
Sbjct:  771 LPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDPLALALLEGKFQEGDTVRVDLSVS 856          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGE 223
            PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YGARP+KR IQQ +EN LA+ IL GE
Sbjct:  765 PLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGE 223
            PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YGARP+KR IQQ +EN LA+ IL GE
Sbjct:  765 PLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGE 223
            PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YGARP+KR IQQ +EN LA+ IL GE
Sbjct:  765 PLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.719e-14
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 220
            PL +D I SI  +QL+R+  R+ +   +++V+D A++L+  +G+DP YGARP+KR IQQ +EN LAK IL G
Sbjct:  765 PLSQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAG 836          
The following BLAST results are available for this feature:
BLAST of EY684799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
CLPB_SALTY4.363e-1450.68Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI4.363e-1450.68Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_PSEAE4.363e-1447.30Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_COXBU5.698e-1443.90Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_SHIFL7.442e-1450.68Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_GEOSL7.442e-1440.70Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_ECOLI7.442e-1450.68Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL67.442e-1450.68Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO577.442e-1450.68Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_VIBVY9.719e-1448.61Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-G10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684799 ID=EY684799; Name=EY684799; organism=Citrus sinensis; type=EST; length=917bp
TCCACCACTGGACCGTGACCAGATAAGCAGTATTGTGAGGTTACAGTTGG
ATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGAAAATGCAAGTGACC
GATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTATGACCCCAACTATGG
TGCAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGTTGAAAATGAGCTTG
CCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAGACACAATTGTAATA
GACACTGAAGTTACAGCATTTTACAATGGCCAGCTTCCCCAGCAAAAGCT
AGGCTTCACGAGAATTGATACCAGATCGGATGCTCCTGCCTGAGATAATC
ACAACCCTTTCTCACACAGCCCACAAGCCCCGCAGCGATGCGGCGACGGG
CGGGGAACACATAACTACGACACCAACACCCGACCAAAAACGAACCATAA
GCAAAGCAAACAGGACACACGAACGCGAGAACCCGCGAAGCCAACTGCAC
GCACAAGCGGAGGCGAACACGCACCGCCGCACACGGAGCGCGGCCACCCC
GCCACCGACAACCCGCCGACGACGACCACCCCACCCACAAACACCGCCCA
ACCACACAAGAACAAAAAACAAAAACAACCAACAAACCACACACCAACCA
AGGGACCCCTCCAGAGACAATCATACTCCGGACACAGACCGCACCAACAC
GTCACGCAGCCCCACACACGACCAAAGACGACCACACACGCGCACCCCAC
CCAACTCCAATCAACACCGCCAACGACGCACGCCGCAGGGAACAACACAA
CACGGCAAACCCACCAACAACCCCCGACCACACACGCCGCCCTCGGACCA
CAGCACGAAAAAACAAAACACCACCCACGCCGCCCCCCCAAACACCACCC
TCGACAAACCAGACGCA
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