EY684799

Overview
NameEY684799
Unique NameEY684799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 33/86 (38.37%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEV 262
            PL ++Q++ IV +Q+ ++ +R+A R++ + V+D+A   L   GY+P YGARP++R+IQQ + ++LAK +L GE +D   + +D ++
Sbjct:  754 PLSQEQLTHIVEIQIAQLAQRLAARRLTLAVSDSAKLWLAERGYEPAYGARPLRRLIQQAIGDQLAKKLLSGEVRDGSEVHVDADL 839          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVI 250
            L R  +  IVR+QL RV+K +ADR+M + +   A+  L   GYDP YGARP+KRVIQ+ + + +AK +L GE +D   I +
Sbjct:  764 LSRHNMGDIVRIQLQRVEKLLADRRMALALDAEALNWLADKGYDPVYGARPLKRVIQKELVDPIAKKLLAGEIEDGGVIAV 844          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            L    +  IV ++LD VQ+R+ DR++ + VT+AA + L   GY P YGARP+ R+IQ+ + N +A  I++GE K ++ +VID
Sbjct:  700 LSEKNLEDIVNVRLDEVQQRLNDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNTMAMKIIQGEIKSDENVVID 781          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVT 265
            L + Q+  IV++Q  R++ R+A RKM ++++DAA+  L   G+DP YGARP+KR IQ+ +E  +AK ILR  F + DTI +D   T
Sbjct:  774 LQKAQLREIVKIQTHRLESRLA-RKMSLKLSDAALDFLAE-GFDPVYGARPLKRAIQRELETTIAKEILRSNFTEGDTIFVDVGET 857          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 34/82 (41.46%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            L  +Q++SIV +Q+ ++  R+A R++ ++V+D+A   L   GYDP YGARP++R+IQQ + + LAK +L G  +D D +++D
Sbjct:  757 LSPEQLTSIVDIQIKQLTDRLAGRRLNLRVSDSAKAWLAERGYDPAYGARPLRRLIQQAIGDTLAKELLAGNVRDGDGVLVD 838          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_PORGI (Chaperone protein clpB OS=Porphyromonas gingivalis GN=clpB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.833e-12
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            PL   +I  IVRLQLD + +++AD  + +  T+A +      GYDP +GARPVKRV+Q++V NEL+K +L         ++ID
Sbjct:  770 PLTEKEIYEIVRLQLDGIVRQLADNDVVLHYTEAVVTFAAREGYDPQFGARPVKRVLQRFVLNELSKALLADTVDSTRPVLID 852          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.833e-12
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            L    + SIV +QL  +++R+A+R++ + +T+ A   L  LGYDP YGARP++R I QY+E  LA+ IL G+ +D   + +D
Sbjct:  757 LTAKDLQSIVDIQLGGLRRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTISQYIETPLAREILGGQIQDGSVLNVD 838          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.394e-12
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            PL  ++I  IV   +  +Q R+ADR + +++TDAA + +   G+DP YGARP+KR +Q+ VE +LA+ ++ G   D   +V+D E
Sbjct:  773 PLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVE 857          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            PL  +Q+  + RLQ+  V  R+A+R + + VTDAA+ ++ SL YDP YGARP++R I++ V  +L+K +++ E  +  T+ ID
Sbjct:  768 PLSHEQLRKVARLQMKDVAVRLAERGVALAVTDAALDVILSLSYDPVYGARPIRRWIEKRVVTQLSKMLIQEEIDENCTVYID 850          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVI 250
            L RD++ +IV +QL R+   +ADRK+ +++ + A   L + GYDP YGARP+KRVIQ+ V++ LA+ IL GE  D   + +
Sbjct:  768 LRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPDGSRVKV 848          
The following BLAST results are available for this feature:
BLAST of EY684799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
CLPB_CORDI4.824e-1338.37Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_CAUCR4.824e-1345.68Chaperone protein clpB OS=Caulobacter crescentus G... [more]
HSP78_SCHPO6.300e-1342.68Heat shock protein 78, mitochondrial OS=Schizosacc... [more]
CLPB_PLEBO6.300e-1345.35Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_CORGL6.300e-1341.46Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB_PORGI1.833e-1242.17Chaperone protein clpB OS=Porphyromonas gingivalis... [more]
CLPB_DEIRA1.833e-1241.46Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_BACCR2.394e-1240.00Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
HS101_ORYSJ3.127e-1240.96Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
CLPB_AGRT53.127e-1244.44Chaperone protein clpB OS=Agrobacterium tumefacien... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-G10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684799 ID=EY684799; Name=EY684799; organism=Citrus sinensis; type=EST; length=917bp
TCCACCACTGGACCGTGACCAGATAAGCAGTATTGTGAGGTTACAGTTGG
ATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGAAAATGCAAGTGACC
GATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTATGACCCCAACTATGG
TGCAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGTTGAAAATGAGCTTG
CCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAGACACAATTGTAATA
GACACTGAAGTTACAGCATTTTACAATGGCCAGCTTCCCCAGCAAAAGCT
AGGCTTCACGAGAATTGATACCAGATCGGATGCTCCTGCCTGAGATAATC
ACAACCCTTTCTCACACAGCCCACAAGCCCCGCAGCGATGCGGCGACGGG
CGGGGAACACATAACTACGACACCAACACCCGACCAAAAACGAACCATAA
GCAAAGCAAACAGGACACACGAACGCGAGAACCCGCGAAGCCAACTGCAC
GCACAAGCGGAGGCGAACACGCACCGCCGCACACGGAGCGCGGCCACCCC
GCCACCGACAACCCGCCGACGACGACCACCCCACCCACAAACACCGCCCA
ACCACACAAGAACAAAAAACAAAAACAACCAACAAACCACACACCAACCA
AGGGACCCCTCCAGAGACAATCATACTCCGGACACAGACCGCACCAACAC
GTCACGCAGCCCCACACACGACCAAAGACGACCACACACGCGCACCCCAC
CCAACTCCAATCAACACCGCCAACGACGCACGCCGCAGGGAACAACACAA
CACGGCAAACCCACCAACAACCCCCGACCACACACGCCGCCCTCGGACCA
CAGCACGAAAAAACAAAACACCACCCACGCCGCCCCCCCAAACACCACCC
TCGACAAACCAGACGCA
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