EY684799

Overview
NameEY684799
Unique NameEY684799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.097e-12
Identity = 30/85 (35.29%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            PL R+ +  IV +Q +R+++    +++ ++++D A+  L   G+DP +GARP+KRV+Q+ + N L++ IL G+  ++DT+ I  E
Sbjct:  345 PLTRENLREIVTIQFNRIKETARRQRITLEISDEALMWLAKTGFDPAFGARPLKRVMQRQITNRLSEMILAGQVGEDDTVEIGLE 429          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF-YNGQLP 289
            L + ++  IV +Q  R+ K + DRK+ + +  AA   L   G+DP YGARP+KRVIQ+ V++ LA+ IL G  KD D + I  E     +NG+ P
Sbjct:  767 LQKSEMGRIVDIQFARLTKLLEDRKIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSVKDGDHVAISAEGGVLTFNGKPP 861          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTI 244
            L   QIS IV++QLD V +R+  +K+ +     AI  L   GYDP YGARP+KRVIQ  + N L+K I+ G+ K  DTI
Sbjct:  766 LGEAQISGIVKVQLDLVAQRLRAKKIGIDFNQEAIDFLAKKGYDPIYGARPLKRVIQTELLNPLSKEIISGKVKAGDTI 844          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            PL  ++I  IV   +  +Q R+ADR + +++TDAA + +   G+DP YGARP+KR +Q+ VE +LA+ ++     D   +V+D E
Sbjct:  773 PLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIASTITDNSHVVVDVE 857          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_RICPR (Chaperone protein clpB OS=Rickettsia prowazekii GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            L+R+ I  IV++QL  ++K +  + + ++  ++A+  L   GYDP++GARP+KR+IQ+ ++N LAK IL GE    +T+ I  E
Sbjct:  765 LNRNNIHDIVKIQLGSLKKILLQQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGNTVKIRRE 848          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 32/84 (38.10%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            L+R+ I  IV++QL+ ++K +  + + ++  ++A+  L   GYDP++GARP+KR+IQ+ ++N LAK IL GE     T+ I+++
Sbjct:  765 LNRNNIHDIVKIQLESLKKILLAQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGKTVKINSK 848          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFK 229
            PL ++ I  I  +Q++R+  R+ ++  ++ V ++A+  +   G+DP YGARP+KR IQQY+EN LA+ IL G+ +
Sbjct:  765 PLGQENIKHIASIQIERLVNRLKEKDYELTVQESALDFVAKAGFDPVYGARPLKRAIQQYIENPLAQEILSGKLE 839          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_MYCLE (Chaperone protein clpB OS=Mycobacterium leprae GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 32/82 (39.02%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            L+ +++  IV +QL+++ KR+A R+++++V+  A + L   G+DP YGARP++R++QQ + ++LAK +L GE  D DT+ ++
Sbjct:  756 LNPEELVRIVDIQLEQLGKRLAQRRLQLEVSLPAKRWLAQHGFDPVYGARPLRRLVQQAIGDQLAKMLLAGEVHDGDTLPVN 837          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 33/87 (37.93%), Postives = 60/87 (68.97%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTA 268
            L+ +++  IV +QL ++ KR+A R++++QV+  A + L   G+DP YGARP++R++QQ + ++LAK +L G+  D DT+ ++    A
Sbjct:  756 LNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVPVNVSPDA 842          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 33/87 (37.93%), Postives = 60/87 (68.97%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTA 268
            L+ +++  IV +QL ++ KR+A R++++QV+  A + L   G+DP YGARP++R++QQ + ++LAK +L G+  D DT+ ++    A
Sbjct:  756 LNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVPVNVSPDA 842          
The following BLAST results are available for this feature:
BLAST of EY684799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
CLPB1_CHLTE9.097e-1235.29Probable chaperone protein clpB 1 OS=Chlorobium te... [more]
CLPB_RHOPA1.188e-1141.05Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_BDEBA1.188e-1148.10Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB_BACC11.188e-1138.82Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_RICPR1.552e-1139.29Chaperone protein clpB OS=Rickettsia prowazekii GN... [more]
CLPB_RICCN1.552e-1138.10Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_PHOPR1.552e-1140.00Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_MYCLE1.552e-1139.02Chaperone protein clpB OS=Mycobacterium leprae GN=... [more]
CLPB_MYCTU2.027e-1137.93Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO2.027e-1137.93Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-G10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684799 ID=EY684799; Name=EY684799; organism=Citrus sinensis; type=EST; length=917bp
TCCACCACTGGACCGTGACCAGATAAGCAGTATTGTGAGGTTACAGTTGG
ATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGAAAATGCAAGTGACC
GATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTATGACCCCAACTATGG
TGCAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGTTGAAAATGAGCTTG
CCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAGACACAATTGTAATA
GACACTGAAGTTACAGCATTTTACAATGGCCAGCTTCCCCAGCAAAAGCT
AGGCTTCACGAGAATTGATACCAGATCGGATGCTCCTGCCTGAGATAATC
ACAACCCTTTCTCACACAGCCCACAAGCCCCGCAGCGATGCGGCGACGGG
CGGGGAACACATAACTACGACACCAACACCCGACCAAAAACGAACCATAA
GCAAAGCAAACAGGACACACGAACGCGAGAACCCGCGAAGCCAACTGCAC
GCACAAGCGGAGGCGAACACGCACCGCCGCACACGGAGCGCGGCCACCCC
GCCACCGACAACCCGCCGACGACGACCACCCCACCCACAAACACCGCCCA
ACCACACAAGAACAAAAAACAAAAACAACCAACAAACCACACACCAACCA
AGGGACCCCTCCAGAGACAATCATACTCCGGACACAGACCGCACCAACAC
GTCACGCAGCCCCACACACGACCAAAGACGACCACACACGCGCACCCCAC
CCAACTCCAATCAACACCGCCAACGACGCACGCCGCAGGGAACAACACAA
CACGGCAAACCCACCAACAACCCCCGACCACACACGCCGCCCTCGGACCA
CAGCACGAAAAAACAAAACACCACCCACGCCGCCCCCCCAAACACCACCC
TCGACAAACCAGACGCA
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