EY684795

Overview
NameEY684795
Unique NameEY684795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 53/198 (26.77%), Postives = 88/198 (44.44%), Query Frame = 2
Query:  134 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPCYVCLLSRLCLSLYASGRTTGY------LVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLT 700
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE           +   + LY + R          LV++      H SP+ ++   +       L G+ LT    +L++
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELIS 197          
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 53/198 (26.77%), Postives = 88/198 (44.44%), Query Frame = 2
Query:  134 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPCYVCLLSRLCLSLYASGRTTGY------LVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLT 700
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE           +   + LY + R          LV++      H SP+ ++   +       L G+ LT    +L++
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELIS 197          
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 55/211 (26.07%), Postives = 98/211 (46.45%), Query Frame = 2
Query:  134 LVCDNGTGMVKAGFAGDDA----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNE---LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPCY------VCLLSRLCLSLYASGRTT----GYLVLNLEMGPPHR--SPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTV 703
            LV DNG   +KAGF  DD     PR + P+ + R RH  +         YVG E +  +    L  + P+E G + NW+  ++IW   F+++    +  P +  ++LTE P +  + +    QI+FE +    Y      V    R   S++ + ++T      ++L ++ G  H   +P+ + +P H       + G+ +T    +LL+V
Sbjct:   22 LVLDNGADTIKAGFVSDDKSDGKPR-IIPNCLARDRHRKI---------YVGSELEKCKDFSELAFRRPVEKGFIVNWEAQKEIWDREFFDDKAAQKCDPSDTRLILTEQPNSLPSLQTHCDQIVFEEYGFASYYRGLGPVFNAYRDIQSIFRTPQSTIDSPAQVILLIDSGYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYLTRLLSV 222          
The following BLAST results are available for this feature:
BLAST of EY684795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
ARP6_ORYSJ1.445e-1126.77Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI1.445e-1126.77Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP6_NEUCR9.366e-1126.07Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684795 ID=EY684795; Name=EY684795; organism=Citrus sinensis; type=EST; length=878bp
GGTAGCTTAACGCACAGCGCAAAGTCCGTTAGTGAGAGAGAGAATCAGAA
CAGAAACAAAAGGAAGAAAAAAAAATTATTTTTTTTTAGAAATTCGAAGT
TAGAAAATGGCAGATACTGAGGATATTCAGCCTCTTGTTTGTGACAATGG
GACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTG
TGTTCCCCAGCATTGTGGGTCGCCCTCGCCACACTGGAGTTATGGTTGGT
ATGGGTCAGAAAGATGCCTATGTTGGTGATGAGGCTCAATCCAAAAGAGG
TATTTTGACTTTGAAATACCCAATCGAGCATGGCATTGTTAGCAACTGGG
ACGATATGGAGAAAATCTGGCATCACACATTTTATAATGAGCTTCGTGTG
GCTCCGGAAGAGCATCCGGTTCTTCTCACTGAGGCTCCCCTTAATCCGAA
GGCCAATCGTGAGAAGATGACACAGATTATGTTTGAGACCTTTAACACCC
CCTGCTATGTATGTTTGCTATCCAGGCTGTGCCTTTCTCTCTATGCTAGC
GGTCGTACAACTGGGTATTTGGTCTTGAATCTGGAAATGGGGCCCCCACA
CAGATCCCCTCTATGAAAAAGTAAGCCCTTCCACCTGCCATACCCCAATG
GAACCTTGCCAGGGCGGCAACTTACCAGACCCCCTCATAAACTACTGACC
GTACCGGGATACCTCTATCTCCCCCCCCCTGAGCTGAAGCGAGCTAAGAA
AAGAAATGCCAAGGAAACGAAGACGAAAAGCGGCGGACCGGGCAGCGACG
CACAAAAAAGGACCCCCTACCCCTACCTCCCCACCCAGAGAACAACACAG
GAACAAGCGCCTGTCCACCAGAGAATAA
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