EY684787

Overview
NameEY684787
Unique NameEY684787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y4822_MYCSK (Uncharacterized tRNA/rRNA methyltransferase Mkms_4822 OS=Mycobacterium sp. (strain KMS) GN=Mkms_4822 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 59/170 (34.71%), Postives = 92/170 (54.12%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQGL L   P +     +L   +  +   +L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L S A+ G +V+G         L+E+    P ++V+GSEG GL  LV  +C  +V IP
Sbjct:  119 ILEVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGLDADGDTT-LDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIP 287          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y4736_MYCSS (Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_4736 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 59/170 (34.71%), Postives = 92/170 (54.12%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQGL L   P +     +L   +  +   +L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L S A+ G +V+G         L+E+    P ++V+GSEG GL  LV  +C  +V IP
Sbjct:  119 ILEVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGLDADGDTT-LDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIP 287          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y5079_MYCMM (Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_5079 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.949e-20
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQG+ L   P       +L   + D   A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         ++++    P ++V+GSEG GL  LV ++C  +V +P
Sbjct:  116 ILEVPRTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPALL-VALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRVVGLDAGGDTA-IDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVP 283          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y4155_MYCUA (Uncharacterized tRNA/rRNA methyltransferase MUL_4155 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_4155 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.949e-20
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQG+ L   P       +L   + D   A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         ++++    P ++V+GSEG GL  LV ++C  +V +P
Sbjct:  116 ILEVPRTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPALL-VALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRVVGLDAGGDTA-IDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVP 283          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_ACIAD (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Acinetobacter sp. (strain ADP1) GN=rlmB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.548e-19
Identity = 61/176 (34.66%), Postives = 95/176 (53.98%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVS-SAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNI 520
            +++ S+  L  + G   HQG+V    P  ++  K+LD +  + DQA L +ALD+VTDP NLGA IR+A   G + V++    SA L+    K +AG  E V+     N+ + L    A    +V+G  +  KA+P+ +        +V+G+E TGLRP+ +  C   V IP  GN+
Sbjct:   52 VQKASRDSLEKLAGLPFHQGVVAAVRPHPVLNEKDLDQLLQNNDQALL-LALDQVTDPHNLGACIRTAAAMGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLDEKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNL 226          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y3644_MYCBP (Uncharacterized tRNA/rRNA methyltransferase BCG_3644c OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_3644c PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.022e-19
Identity = 58/170 (34.12%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQG+ L   P       +L   + D+  A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++      ++V+GSEG GL  LV ++C  +V IP
Sbjct:  115 IVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL-VALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGG-GTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP 282          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y3618_MYCTA (Uncharacterized tRNA/rRNA methyltransferase MRA_3618 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_3618 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.022e-19
Identity = 58/170 (34.12%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQG+ L   P       +L   + D+  A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++      ++V+GSEG GL  LV ++C  +V IP
Sbjct:  115 IVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL-VALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGG-GTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP 282          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y3579_MYCTU (Uncharacterized tRNA/rRNA methyltransferase Rv3579c/MT3685 OS=Mycobacterium tuberculosis GN=Rv3579c PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.022e-19
Identity = 58/170 (34.12%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQG+ L   P       +L   + D+  A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++      ++V+GSEG GL  LV ++C  +V IP
Sbjct:  115 IVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL-VALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGG-GTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP 282          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y6073_MYCS2 (Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073 OS=Mycobacterium smegmatis GN=MSMEG_6073 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 59/170 (34.71%), Postives = 90/170 (52.94%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  +  HQGL L   P       +L   +  +   +L VALD ++DP+NLGAI+RS   F   GVV+  + SA ++ V  + SAG+   V +    N+ + L S A+ G +++G         L+E+    PT++V+GSEG GL  LV   C  +V IP
Sbjct:  119 ILEVPRTDLDRMSNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLGAIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQIVGLDAGGDTT-LDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIP 287          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y3610_MYCBO (Uncharacterized tRNA/rRNA methyltransferase Mb3610c OS=Mycobacterium bovis GN=Mb3610c PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 58/170 (34.12%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQG+ L   P       +L   + D+  A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++      ++V+GSEG GL  LV ++C  +V IP
Sbjct:  115 IVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL-VALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGG-GTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP 282          
The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
Y4822_MYCSK4.074e-2034.71Uncharacterized tRNA/rRNA methyltransferase Mkms_4... [more]
Y4736_MYCSS4.074e-2034.71Uncharacterized tRNA/rRNA methyltransferase Mmcs_4... [more]
Y5079_MYCMM6.949e-2033.53Uncharacterized tRNA/rRNA methyltransferase MMAR_5... [more]
Y4155_MYCUA6.949e-2033.53Uncharacterized tRNA/rRNA methyltransferase MUL_41... [more]
RLMB_ACIAD1.548e-1934.6623S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
Y3644_MYCBP2.022e-1934.12Uncharacterized tRNA/rRNA methyltransferase BCG_36... [more]
Y3618_MYCTA2.022e-1934.12Uncharacterized tRNA/rRNA methyltransferase MRA_36... [more]
Y3579_MYCTU2.022e-1934.12Uncharacterized tRNA/rRNA methyltransferase Rv3579... [more]
Y6073_MYCS23.449e-1934.71Uncharacterized tRNA/rRNA methyltransferase MSMEG_... [more]
Y3610_MYCBO3.449e-1934.12Uncharacterized tRNA/rRNA methyltransferase Mb3610... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bp
CATAAAGGAAACCTCAAAGCATGATCTCAATATGGTTGTTGGTAATCGCC
CTCATCAGGGTCTTGTTCTTGACGCATCTCCATTGGAGATGGTCAAAATA
AAAGAATTGGACCCTATTTCGGCTGATGAAGATCAAGCCTCTCTTTGGGT
AGCACTGGATGAGGTGACAGATCCTCAAAATTTGGGGGCCATCATTAGGT
CTGCTTACTTCTTTGGAGCTTCAGGGGTGGTTTTGTGTGCAAAAAATTCA
GCACCATTGAGTGGTGTTGTGAGCAAGGCTAGTGCAGGGTCACTTGAATT
GGTGGAGCTGAGGTACTGTAACAATATGATGCAGTTCTTGGTATCATCAG
CTGAAAATGGCTGGCGAGTCCTTGGCGGTTCAGTTTCTTCAAAAGCAGTT
CCCTTGAATGAGATTCCTCCTGGTCAGCCAACTATTCTAGTTTTGGGCAG
TGAGGGCACAGGATTGAGGCCTTTGGTGGAGAGATCCTGTACACATTTGG
TTAGGATCCCTGGAAACATTCCAGATGATGTAACTGCTGGCAAAATTGAT
GATGTGGAAGCTAATGGAAACCACGGGTCCACACAACCATTACCGCCCAC
TTACAAGATGTGGCGAACTTTGAGGGCACAGCCCCGCGGTGGCGCTGGAG
ACAGACCGCGGAGAATGGAACCCTGGCTGATGCAAACGAAGACACAGTGA
ACGCGAACCCACGCTAGATCAACCACAATCTAATGGGCCACACGCCGCCG
AGATCAAGACAAAGTCAACCACACAGGAATGAACGGCACGTCGCCCGCCG
GGCCCAATCGGCACGCGCTCTCACCTCGAGACTCAGAAATTAGAAGTCAG
GTAGAGGATACGACCGAGAAACACGAGAATACGAACACTAAGGAAGATCG
GGGAAGGCGCGCCCCCA
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