EY684787

Overview
NameEY684787
Unique NameEY684787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y324_MYCLE (Uncharacterized tRNA/rRNA methyltransferase ML0324 OS=Mycobacterium leprae GN=ML0324 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPDDVTAGKIDDVEAN 565
            I E  +  L+ +  N  HQG+ L   P   V   +L   + D   A L VALD ++DP+NLGAI+RS   F   G+++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++    P  +V+GSEG GL  LV  SC  +V IP        AG+++ + A+
Sbjct:  115 ILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPALL-VALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRVIGLDHDGDTA-LDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIP-------MAGQVESLNAS 293          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y324_MYCLB (Uncharacterized tRNA/rRNA methyltransferase MLBr00324 OS=Mycobacterium leprae (strain Br4923) GN=MLBr00324 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.449e-19
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPDDVTAGKIDDVEAN 565
            I E  +  L+ +  N  HQG+ L   P   V   +L   + D   A L VALD ++DP+NLGAI+RS   F   G+++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++    P  +V+GSEG GL  LV  SC  +V IP        AG+++ + A+
Sbjct:  115 ILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPALL-VALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRVIGLDHDGDTA-LDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIP-------MAGQVESLNAS 293          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: MRM1_YEAST (rRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=MRM1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.003e-18
Identity = 66/205 (32.20%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   17 KHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA------------------------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            KH LN++     H  + L+  PL+ V+I    ++D  SA                        D  +  L + LDE+TDP N+GAIIRSAYF G   +V+  +N +PL+ VVSK S+G+LEL+ + Y +  ++F   S E  GW      L  + S K           LN +    P +LV+G+E  G+R  ++      V IP
Sbjct:  173 KHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEIP 377          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: YACO_BACSU (Putative trmH family tRNA/rRNA methyltransferase yacO OS=Bacillus subtilis GN=yacO PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.235e-18
Identity = 55/178 (30.90%), Postives = 96/178 (53.93%), Query Frame = 2
Query:   32 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPDDVTAGKIDDVEAN 565
            MV G   HQG+V   +  E  ++ +L   + ++++   ++ LDE+ DP NLG+I+R+A   GA G+V+  + +  L+  V+KAS G++E + +    N+ + L    E G  V+G   S++      +    P  LV+GSEG G+  LV+  C  L+++P        AGK+  + A+
Sbjct:   63 MVTGQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARE-DFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLP-------MAGKVTSLNAS 230          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y572_MYCA9 (Uncharacterized tRNA/rRNA methyltransferase MAB_0572 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=MAB_0572 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.449e-17
Identity = 60/188 (31.91%), Postives = 95/188 (50.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPDDVTAGKIDDVEAN 565
            I E  + DL+ +  N  HQGL L   P +     +L   +  E Q +L VALD ++DP+NLGAI+RS   FG  GVV+  + SA ++ V  + SAG+   + +    N+ + L    + G  ++G         L+ +       +V+GSEG GL  LV ++C  +V IP        AG ++ + A+
Sbjct:  121 ILEVPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGITIVGLDAGGD-TELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIP-------MAGPVESLNAS 300          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PSESM (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pseudomonas syringae pv. tomato GN=rlmB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.228e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG+V D SP ++     LD +    +   L + LD VTDP NLGA +R+A   GA  V++    SA L+  V K + G+ E++ L    N+ + L    + G  V+ G+     V L +     PTI+++G+EG G+R L    C +LVR+P
Sbjct:   68 HQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVV-GTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLP 219          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAHJ (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      D++  S  V LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G+++ V +    N+ + +    E+G+ V  G+ +  A    ++    P  +V+GSEG G+  LV+  C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWV-AGAEADNATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_VIBCH (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio cholerae GN=rlmB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I+E S+  L+       HQGL+    P   +   +LD I A  +Q  L V LD VTDP NLGA +R+A   G + V++    SAPL+  VSK + G+ E V L    N+ + + +  E G W V  G+       + +        +V+G+EG G+R L   +C  L++IP
Sbjct:   51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV--GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAS1 (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP2224 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 46/158 (29.11%), Postives = 83/158 (52.53%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + + PHQG+    +P E             +D+ S  + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G+++ + +    N+   + +  +NG+ ++ G+ +  +    E+  G P  +V+GSEG G+  LV+  C   + IP
Sbjct:   61 LSDSPHQGVAAYIAPYEYADFDAFVAQQKAQDKLSTVLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDNGYWIV-GTEAENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PSEAE (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pseudomonas aeruginosa GN=rlmB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.733e-16
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG+V + SP ++     L+ +    +   L +ALD VTDP NLGA +R+A   G   V++    SA L+  V K + G+ E++ L    N+ + L    + G  V+ G+       L ++    PT+LV+G+EG G+R L    C  L R+P
Sbjct:   68 HQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVV-GTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLP 219          
The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
Y324_MYCLE3.449e-1932.45Uncharacterized tRNA/rRNA methyltransferase ML0324... [more]
Y324_MYCLB3.449e-1932.45Uncharacterized tRNA/rRNA methyltransferase MLBr00... [more]
MRM1_YEAST1.003e-1832.20rRNA methyltransferase, mitochondrial OS=Saccharom... [more]
YACO_BACSU2.235e-1830.90Putative trmH family tRNA/rRNA methyltransferase y... [more]
Y572_MYCA91.449e-1731.91Uncharacterized tRNA/rRNA methyltransferase MAB_05... [more]
RLMB_PSESM3.228e-1735.2923S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAHJ5.506e-1731.01Putative trmH family tRNA/rRNA methyltransferase O... [more]
RLMB_VIBCH5.506e-1733.9223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAS12.092e-1629.11Putative trmH family tRNA/rRNA methyltransferase O... [more]
RLMB_PSEAE2.733e-1633.3323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bp
CATAAAGGAAACCTCAAAGCATGATCTCAATATGGTTGTTGGTAATCGCC
CTCATCAGGGTCTTGTTCTTGACGCATCTCCATTGGAGATGGTCAAAATA
AAAGAATTGGACCCTATTTCGGCTGATGAAGATCAAGCCTCTCTTTGGGT
AGCACTGGATGAGGTGACAGATCCTCAAAATTTGGGGGCCATCATTAGGT
CTGCTTACTTCTTTGGAGCTTCAGGGGTGGTTTTGTGTGCAAAAAATTCA
GCACCATTGAGTGGTGTTGTGAGCAAGGCTAGTGCAGGGTCACTTGAATT
GGTGGAGCTGAGGTACTGTAACAATATGATGCAGTTCTTGGTATCATCAG
CTGAAAATGGCTGGCGAGTCCTTGGCGGTTCAGTTTCTTCAAAAGCAGTT
CCCTTGAATGAGATTCCTCCTGGTCAGCCAACTATTCTAGTTTTGGGCAG
TGAGGGCACAGGATTGAGGCCTTTGGTGGAGAGATCCTGTACACATTTGG
TTAGGATCCCTGGAAACATTCCAGATGATGTAACTGCTGGCAAAATTGAT
GATGTGGAAGCTAATGGAAACCACGGGTCCACACAACCATTACCGCCCAC
TTACAAGATGTGGCGAACTTTGAGGGCACAGCCCCGCGGTGGCGCTGGAG
ACAGACCGCGGAGAATGGAACCCTGGCTGATGCAAACGAAGACACAGTGA
ACGCGAACCCACGCTAGATCAACCACAATCTAATGGGCCACACGCCGCCG
AGATCAAGACAAAGTCAACCACACAGGAATGAACGGCACGTCGCCCGCCG
GGCCCAATCGGCACGCGCTCTCACCTCGAGACTCAGAAATTAGAAGTCAG
GTAGAGGATACGACCGAGAAACACGAGAATACGAACACTAAGGAAGATCG
GGGAAGGCGCGCCCCCA
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