EY684787

Overview
NameEY684787
Unique NameEY684787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_VIBPA (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio parahaemolyticus GN=rlmB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.313e-15
Identity = 50/171 (29.24%), Postives = 89/171 (52.05%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I++ ++  L+       HQG++      + +   ++D I A + +  L + LD VTDP NLGA +R+A   G + +++    SAP++  VSK + G+ E+V L    N+ + + +  E G W V  G+       + +     P  +V+G+EG G+R L   +C  L++IP
Sbjct:   51 IQQMTRKTLDDKAHGANHQGIIARVKVAKQLNENDIDDILA-QHETPLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFV--GTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_SHEON (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Shewanella oneidensis GN=rlmB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.313e-15
Identity = 58/171 (33.92%), Postives = 85/171 (49.71%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I+ TS+  L+    +  HQG+V      +++   +LD + A  D   L + LD VTDP NLGA +R+A   G  G+++   NS  L+ VVSK + G+ E V L    N+ + +    E G W V  G+       L +     P  + +G+EG GLR L    C  LV IP
Sbjct:   52 IQVTSRKVLDEKAESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLI-LDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIV--GTAGEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIP 219          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAW (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain MW2) GN=MW0487 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      +++  S  + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAS (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      +++  S  + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAR (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      +++  S  + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAN (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain N315) GN=SA0490 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      +++  S  + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAM (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      +++  S  + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PSEPK (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pseudomonas putida (strain KT2440) GN=rlmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 49/153 (32.03%), Postives = 83/153 (54.25%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG+V + SP ++     L+ +    +   L + LD VTDP NLGA +R+A   GA+ V++    SA L+ VV K + G+ E++ L    N+ + L    + G  V+G +  ++     +   G P ++++G+EG G+R L    C  LV++P
Sbjct:   68 HQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQQDLTG-PLVMIMGAEGKGMRRLTREHCDFLVKLP 219          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_VIBVY (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio vulnificus (strain YJ016) GN=rlmB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 50/154 (32.47%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P + +   +LD I A +  + L + LD VTDP NLGA +R+A   G + V++    SAP++  VSK + G+ E V L    N+ + +    E G W V  G+       + +        +V+G+EG G+R L   +C  L++IP
Sbjct:   68 HQGIIARVKPAKQLNENDLDDILA-KHASPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIV--GTAGEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_VIBVU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio vulnificus GN=rlmB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 50/154 (32.47%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P + +   +LD I A +  + L + LD VTDP NLGA +R+A   G + V++    SAP++  VSK + G+ E V L    N+ + +    E G W V  G+       + +        +V+G+EG G+R L   +C  L++IP
Sbjct:   68 HQGIIARVKPAKQLNENDLDDILA-KHASPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIV--GTAGEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP 218          
The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RLMB_VIBPA2.313e-1529.2423S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_SHEON2.313e-1533.9223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAAW3.946e-1529.75Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAS3.946e-1529.75Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAR3.946e-1529.75Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAN3.946e-1529.75Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAM3.946e-1529.75Putative trmH family tRNA/rRNA methyltransferase O... [more]
RLMB_PSEPK3.946e-1532.0323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_VIBVY1.148e-1432.4723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_VIBVU1.148e-1432.4723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bp
CATAAAGGAAACCTCAAAGCATGATCTCAATATGGTTGTTGGTAATCGCC
CTCATCAGGGTCTTGTTCTTGACGCATCTCCATTGGAGATGGTCAAAATA
AAAGAATTGGACCCTATTTCGGCTGATGAAGATCAAGCCTCTCTTTGGGT
AGCACTGGATGAGGTGACAGATCCTCAAAATTTGGGGGCCATCATTAGGT
CTGCTTACTTCTTTGGAGCTTCAGGGGTGGTTTTGTGTGCAAAAAATTCA
GCACCATTGAGTGGTGTTGTGAGCAAGGCTAGTGCAGGGTCACTTGAATT
GGTGGAGCTGAGGTACTGTAACAATATGATGCAGTTCTTGGTATCATCAG
CTGAAAATGGCTGGCGAGTCCTTGGCGGTTCAGTTTCTTCAAAAGCAGTT
CCCTTGAATGAGATTCCTCCTGGTCAGCCAACTATTCTAGTTTTGGGCAG
TGAGGGCACAGGATTGAGGCCTTTGGTGGAGAGATCCTGTACACATTTGG
TTAGGATCCCTGGAAACATTCCAGATGATGTAACTGCTGGCAAAATTGAT
GATGTGGAAGCTAATGGAAACCACGGGTCCACACAACCATTACCGCCCAC
TTACAAGATGTGGCGAACTTTGAGGGCACAGCCCCGCGGTGGCGCTGGAG
ACAGACCGCGGAGAATGGAACCCTGGCTGATGCAAACGAAGACACAGTGA
ACGCGAACCCACGCTAGATCAACCACAATCTAATGGGCCACACGCCGCCG
AGATCAAGACAAAGTCAACCACACAGGAATGAACGGCACGTCGCCCGCCG
GGCCCAATCGGCACGCGCTCTCACCTCGAGACTCAGAAATTAGAAGTCAG
GTAGAGGATACGACCGAGAAACACGAGAATACGAACACTAAGGAAGATCG
GGGAAGGCGCGCCCCCA
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