EY684787

Overview
NameEY684787
Unique NameEY684787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_COXBU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Coxiella burnetii GN=rlmB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 2
Query:   14 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            S+ +LN  + N  HQG+V D   +E +    L  +    +  +L + LD V DP NLGA +RSA  FG   V+     +  ++ VV K + G+ E+       N+ + +    + G  ++G +V ++ + + EI       +VLGSEG GLR L +  C  L +IP
Sbjct:   56 SRTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP 219          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAE (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      +++     + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAC (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain COL) GN=SACOL0578 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     +      +++     + LD + DP NLG+I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_CHRVO (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Chromobacterium violaceum GN=rlmB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.340e-14
Identity = 57/168 (33.93%), Postives = 81/168 (48.21%), Query Frame = 2
Query:   17 KHDLNMVVGNRPHQGLV--LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            K  L+ + GN  HQG+V  +DAS    +   +LD +  +  +  L + LD VTDP NLGA +R A   GA  V+     SA L+  VSK + G+ E+V      N+ + L    + G W  + G+       L       P   V+G+EG G+R L    C  LV IP
Sbjct:   57 KERLDSMSGNARHQGVVAMIDAS----MNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAVIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVW--IAGTTMEADTDLYHFDASGPLAWVMGAEGEGMRRLTREHCDVLVSIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_BURSP (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Burkholderia sp. GN=rlmB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   26 LNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            LN + G + HQG+V  A   E  +   L+ +    +   L +ALD VTDP NLGA +R A   GA  V+   + +A L+   +KA+ G+ E V      N+ + L +    G +V+ G+       L +I       LV+G+EG G+R L   +C  +VRIP
Sbjct:   60 LNALSGEKRHQGVV--ARVTEATRAHSLETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGAGAHAVIAPRRRAAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVI-GTADDATTSLFDIQLDGALALVMGAEGAGMRRLTREACDEVVRIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAES (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 45/158 (28.48%), Postives = 80/158 (50.63%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     E       + + S  + LD + DP NLG+I+R+A   G   V++  + S  L+  V+KAS G+++ V +    N+ + +    +NG+ +  G+ ++ A    ++       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWI-AGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAEQ (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 45/158 (28.48%), Postives = 80/158 (50.63%), Query Frame = 2
Query:   38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + N PHQG+    +P E     E       + + S  + LD + DP NLG+I+R+A   G   V++  + S  L+  V+KAS G+++ V +    N+ + +    +NG+ +  G+ ++ A    ++       +V+GSEG G+  LV   C   ++IP
Sbjct:   61 LANAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWI-AGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_HAEIN (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Haemophilus influenzae GN=rlmB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            ++  ++  L+       HQG++      + +   +LD I A++ Q  L + LD VTDP NLGA +R+A   GA  V++    SA L+ +  K + G+ E V L    N+ + L    +N    + G+       + +     P  LV+G+EG G+R L    C  L+ IP
Sbjct:   50 VQFVNRQTLDKKADGEVHQGVIARVQAAKELNENDLDEILANK-QNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PHOPR (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Photobacterium profundum GN=rlmB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P + +   +LD I    +   L + LD VTDP NLGA +R+A   GA  V++    +A L+   SK + G+ E++ L    N+ + + +  + G W V  G+       +       P  +V+G+EG G+R L   +C  L++IP
Sbjct:   68 HQGIIARVKPAKQLNEHDLDTILEGSENPLLLI-LDGVTDPHNLGACLRNADAAGAVAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIV--GTAGEATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PASMU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pasteurella multocida GN=rlmB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL--VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I+  ++  L+       HQG++    P + +   +LD +  ++    L V LD VTDP NLGA +R+A   G   V++    SA L+ +  K + G+ E+V L    N+ + L  +    N W V     ++  +   ++  G    LV+G+EG G+R L    C  L+ IP
Sbjct:   50 IQFVNRQTLDKKAEGEVHQGIMARVQPAKELNEADLDTLLQNQSNPLLLV-LDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTLYQTQLTGG--LALVMGAEGEGMRRLTREHCDQLISIP 218          
The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RLMB_COXBU1.148e-1431.3323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAAE1.958e-1429.11Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAC1.958e-1429.11Putative trmH family tRNA/rRNA methyltransferase O... [more]
RLMB_CHRVO3.340e-1433.9323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_BURSP4.363e-1433.3323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAES7.442e-1428.48Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAEQ7.442e-1428.48Putative trmH family tRNA/rRNA methyltransferase O... [more]
RLMB_HAEIN1.269e-1329.4123S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_PHOPR2.828e-1330.5223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_PASMU1.075e-1229.0723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bp
CATAAAGGAAACCTCAAAGCATGATCTCAATATGGTTGTTGGTAATCGCC
CTCATCAGGGTCTTGTTCTTGACGCATCTCCATTGGAGATGGTCAAAATA
AAAGAATTGGACCCTATTTCGGCTGATGAAGATCAAGCCTCTCTTTGGGT
AGCACTGGATGAGGTGACAGATCCTCAAAATTTGGGGGCCATCATTAGGT
CTGCTTACTTCTTTGGAGCTTCAGGGGTGGTTTTGTGTGCAAAAAATTCA
GCACCATTGAGTGGTGTTGTGAGCAAGGCTAGTGCAGGGTCACTTGAATT
GGTGGAGCTGAGGTACTGTAACAATATGATGCAGTTCTTGGTATCATCAG
CTGAAAATGGCTGGCGAGTCCTTGGCGGTTCAGTTTCTTCAAAAGCAGTT
CCCTTGAATGAGATTCCTCCTGGTCAGCCAACTATTCTAGTTTTGGGCAG
TGAGGGCACAGGATTGAGGCCTTTGGTGGAGAGATCCTGTACACATTTGG
TTAGGATCCCTGGAAACATTCCAGATGATGTAACTGCTGGCAAAATTGAT
GATGTGGAAGCTAATGGAAACCACGGGTCCACACAACCATTACCGCCCAC
TTACAAGATGTGGCGAACTTTGAGGGCACAGCCCCGCGGTGGCGCTGGAG
ACAGACCGCGGAGAATGGAACCCTGGCTGATGCAAACGAAGACACAGTGA
ACGCGAACCCACGCTAGATCAACCACAATCTAATGGGCCACACGCCGCCG
AGATCAAGACAAAGTCAACCACACAGGAATGAACGGCACGTCGCCCGCCG
GGCCCAATCGGCACGCGCTCTCACCTCGAGACTCAGAAATTAGAAGTCAG
GTAGAGGATACGACCGAGAAACACGAGAATACGAACACTAAGGAAGATCG
GGGAAGGCGCGCCCCCA
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