EY684787
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_COXBU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Coxiella burnetii GN=rlmB PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14 Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 2 Query: 14 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 S+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA +RSA FG V+ + ++ VV K + G+ E+ N+ + + + G ++G +V ++ + + EI +VLGSEG GLR L + C L +IP Sbjct: 56 SRTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP 219
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAE (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14 Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 2 Query: 38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 + N PHQG+ +P E + +++ + LD + DP NLG+I+R+A G GV++ + S L+ V+KAS G++E V + N+ + + +NG+ V G+ ++ A + +V+GSEG G+ LV C ++IP Sbjct: 61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAC (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain COL) GN=SACOL0578 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14 Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 2 Query: 38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 + N PHQG+ +P E + +++ + LD + DP NLG+I+R+A G GV++ + S L+ V+KAS G++E V + N+ + + +NG+ V G+ ++ A + +V+GSEG G+ LV C ++IP Sbjct: 61 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_CHRVO (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Chromobacterium violaceum GN=rlmB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.340e-14 Identity = 57/168 (33.93%), Postives = 81/168 (48.21%), Query Frame = 2 Query: 17 KHDLNMVVGNRPHQGLV--LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 K L+ + GN HQG+V +DAS + +LD + + + L + LD VTDP NLGA +R A GA V+ SA L+ VSK + G+ E+V N+ + L + G W + G+ L P V+G+EG G+R L C LV IP Sbjct: 57 KERLDSMSGNARHQGVVAMIDAS----MNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAVIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVW--IAGTTMEADTDLYHFDASGPLAWVMGAEGEGMRRLTREHCDVLVSIP 218
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_BURSP (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Burkholderia sp. GN=rlmB PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14 Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 2 Query: 26 LNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 LN + G + HQG+V A E + L+ + + L +ALD VTDP NLGA +R A GA V+ + +A L+ +KA+ G+ E V N+ + L + G +V+ G+ L +I LV+G+EG G+R L +C +VRIP Sbjct: 60 LNALSGEKRHQGVV--ARVTEATRAHSLETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGAGAHAVIAPRRRAAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVI-GTADDATTSLFDIQLDGALALVMGAEGAGMRRLTREACDEVVRIP 218
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAES (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14 Identity = 45/158 (28.48%), Postives = 80/158 (50.63%), Query Frame = 2 Query: 38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 + N PHQG+ +P E E + + S + LD + DP NLG+I+R+A G V++ + S L+ V+KAS G+++ V + N+ + + +NG+ + G+ ++ A ++ +V+GSEG G+ LV C ++IP Sbjct: 61 LANAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWI-AGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIP 217
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: TRMHL_STAEQ (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14 Identity = 45/158 (28.48%), Postives = 80/158 (50.63%), Query Frame = 2 Query: 38 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 + N PHQG+ +P E E + + S + LD + DP NLG+I+R+A G V++ + S L+ V+KAS G+++ V + N+ + + +NG+ + G+ ++ A ++ +V+GSEG G+ LV C ++IP Sbjct: 61 LANAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWI-AGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIP 217
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_HAEIN (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Haemophilus influenzae GN=rlmB PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13 Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 2 Query: 2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 ++ ++ L+ HQG++ + + +LD I A++ Q L + LD VTDP NLGA +R+A GA V++ SA L+ + K + G+ E V L N+ + L +N + G+ + + P LV+G+EG G+R L C L+ IP Sbjct: 50 VQFVNRQTLDKKADGEVHQGVIARVQAAKELNENDLDEILANK-QNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIP 218
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PHOPR (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Photobacterium profundum GN=rlmB PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13 Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 2 Query: 53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 HQG++ P + + +LD I + L + LD VTDP NLGA +R+A GA V++ +A L+ SK + G+ E++ L N+ + + + + G W V G+ + P +V+G+EG G+R L +C L++IP Sbjct: 68 HQGIIARVKPAKQLNEHDLDTILEGSENPLLLI-LDGVTDPHNLGACLRNADAAGAVAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIV--GTAGEATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIP 218
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PASMU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pasteurella multocida GN=rlmB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12 Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 2 Query: 2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL--VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511 I+ ++ L+ HQG++ P + + +LD + ++ L V LD VTDP NLGA +R+A G V++ SA L+ + K + G+ E+V L N+ + L + N W V ++ + ++ G LV+G+EG G+R L C L+ IP Sbjct: 50 IQFVNRQTLDKKAEGEVHQGIMARVQPAKELNEADLDTLLQNQSNPLLLV-LDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTLYQTQLTGG--LALVMGAEGEGMRRLTREHCDQLISIP 218 The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bpback to top |