EY684787

Overview
NameEY684787
Unique NameEY684787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_YERPE (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Yersinia pestis GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 54/171 (31.58%), Postives = 79/171 (46.20%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I+  S+  L+  V    HQG+V         +  +L P   +  +    + LD VTDP NLGA +RSA   G   V++    SA L+ +  K ++G+ E V L    N+ + L V    N W V  G+       L +     P  LV+G+EG G+R L    C  L+ IP
Sbjct:   50 IQVASRQWLDSQVEGGVHQGIVARVREGRQYQENDL-PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIV--GTAGEADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_SHIFL (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Shigella flexneri GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P    +  +L  + A  DQ  L + LD VTDP NLGA +RSA   G   V++    SA L+    K + G+ E V L    N+ + + +   EN W V  G+       L +        LV+G+EG G+R L    C  L+ IP
Sbjct:   67 HQGIIARVKPGRQYQENDLPDLIASLDQPFLLI-LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIV--GTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_ECOLI (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Escherichia coli (strain K12) GN=rlmB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P    +  +L  + A  DQ  L + LD VTDP NLGA +RSA   G   V++    SA L+    K + G+ E V L    N+ + + +   EN W V  G+       L +        LV+G+EG G+R L    C  L+ IP
Sbjct:   67 HQGIIARVKPGRQYQENDLPDLIASLDQPFLLI-LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIV--GTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_ECOL6 (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Escherichia coli O6 GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P    +  +L  + A  DQ  L + LD VTDP NLGA +RSA   G   V++    SA L+    K + G+ E V L    N+ + + +   EN W V  G+       L +        LV+G+EG G+R L    C  L+ IP
Sbjct:   67 HQGIIARVKPGRQYQENDLPDLIASLDQPFLLI-LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIV--GTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_ECO57 (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Escherichia coli O157:H7 GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.127e-12
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P    +  +L  + A  DQ  L + LD VTDP NLGA +RSA   G   V++    SA L+    K + G+ E V L    N+ + + +   EN W V  G+       L +        LV+G+EG G+R L    C  L+ IP
Sbjct:   67 HQGIIARVKPGRQYQENDLPDLIASLDQPFLLI-LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIV--GTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_XANCP (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Xanthomonas campestris pv. campestris GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.083e-12
Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPDDV 532
            ++  +   L+ V G   HQG+    +   +    EL+ +       +L + LD V DP NLGA +RSA   G + VV+    SA ++  V K SAG+ + + +    N+ + L    + G W  L G        L  +       LVLG EG GLR L    C  LV+IP  +P D+
Sbjct:   53 VRRVNTQALDGVGGQVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVW--LYGLAGEAEASLYSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIP--MPGDI 226          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_SALTY (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Salmonella typhimurium GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.083e-12
Identity = 48/153 (31.37%), Postives = 73/153 (47.71%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P    +  +L  + A  D+  L + LD VTDP NLGA +RSA   G   V++    SA L+    K + G+ E V L    N+ + +    E    ++G +  +         PG+   LV+G+EG G+R L    C  L+ IP
Sbjct:   67 HQGIIARVKPGRQYQENDLPDLIALHDRPFLLI-LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGR-MALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_SALTI (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Salmonella typhi GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.083e-12
Identity = 48/153 (31.37%), Postives = 73/153 (47.71%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P    +  +L  + A  D+  L + LD VTDP NLGA +RSA   G   V++    SA L+    K + G+ E V L    N+ + +    E    ++G +  +         PG+   LV+G+EG G+R L    C  L+ IP
Sbjct:   67 HQGIIARVKPGRQYQENDLPDLIALHDRPFLLI-LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGR-MALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_PHOLL (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Photorhabdus luminescens subsp. laumondii GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.333e-12
Identity = 52/154 (33.77%), Postives = 72/154 (46.75%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAE-NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            HQG++    P    +  +L  + A  +   L V LD VTDP NLGA +RSA   G   V++    SA L+    K + G+ E V L    N+ + L    E N W V  G+       L +     P  LV+G+EG G+R L    C  L+ IP
Sbjct:   67 HQGIIAKVKPGRQYQENDLPDLLAQVETPFLLV-LDGVTDPHNLGACLRSADAAGVHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEYNIWVV--GTAGEADHTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y516_BORBU (Uncharacterized tRNA/rRNA methyltransferase BB_0516 OS=Borrelia burgdorferi GN=BB_0516 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.965e-12
Identity = 54/196 (27.55%), Postives = 97/196 (49.49%), Query Frame = 2
Query:   20 HDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD---------EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI-LVLGSEGTGLRPLVERSCTHLVRIPGNIPDDVTAGKIDDVEANGNHG 577
            ++L+ ++ N+ H+G  L    L++ K K +   + D         + + +  + LDE+ DPQN GAI+R+A  F    V+   K SA  +  V + S+G+ + V+     N+   +      G+ +  G +  K   +N+I      I L+LG+EG G+  L++ +   L+RIP       T+GKID +  + + G
Sbjct:   32 NELDKILKNKDHRGFALK---LKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDI--KGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIRIP-------TSGKIDSLNVSVSTG 215          
The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RLMB_YERPE3.127e-1231.5823S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_SHIFL3.127e-1233.1223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_ECOLI3.127e-1233.1223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_ECOL63.127e-1233.1223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_ECO573.127e-1233.1223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_XANCP4.083e-1230.9023S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_SALTY4.083e-1231.3723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_SALTI4.083e-1231.3723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_PHOLL5.333e-1233.7723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
Y516_BORBU6.965e-1227.55Uncharacterized tRNA/rRNA methyltransferase BB_051... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bp
CATAAAGGAAACCTCAAAGCATGATCTCAATATGGTTGTTGGTAATCGCC
CTCATCAGGGTCTTGTTCTTGACGCATCTCCATTGGAGATGGTCAAAATA
AAAGAATTGGACCCTATTTCGGCTGATGAAGATCAAGCCTCTCTTTGGGT
AGCACTGGATGAGGTGACAGATCCTCAAAATTTGGGGGCCATCATTAGGT
CTGCTTACTTCTTTGGAGCTTCAGGGGTGGTTTTGTGTGCAAAAAATTCA
GCACCATTGAGTGGTGTTGTGAGCAAGGCTAGTGCAGGGTCACTTGAATT
GGTGGAGCTGAGGTACTGTAACAATATGATGCAGTTCTTGGTATCATCAG
CTGAAAATGGCTGGCGAGTCCTTGGCGGTTCAGTTTCTTCAAAAGCAGTT
CCCTTGAATGAGATTCCTCCTGGTCAGCCAACTATTCTAGTTTTGGGCAG
TGAGGGCACAGGATTGAGGCCTTTGGTGGAGAGATCCTGTACACATTTGG
TTAGGATCCCTGGAAACATTCCAGATGATGTAACTGCTGGCAAAATTGAT
GATGTGGAAGCTAATGGAAACCACGGGTCCACACAACCATTACCGCCCAC
TTACAAGATGTGGCGAACTTTGAGGGCACAGCCCCGCGGTGGCGCTGGAG
ACAGACCGCGGAGAATGGAACCCTGGCTGATGCAAACGAAGACACAGTGA
ACGCGAACCCACGCTAGATCAACCACAATCTAATGGGCCACACGCCGCCG
AGATCAAGACAAAGTCAACCACACAGGAATGAACGGCACGTCGCCCGCCG
GGCCCAATCGGCACGCGCTCTCACCTCGAGACTCAGAAATTAGAAGTCAG
GTAGAGGATACGACCGAGAAACACGAGAATACGAACACTAAGGAAGATCG
GGGAAGGCGCGCCCCCA
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