EY684787

Overview
NameEY684787
Unique NameEY684787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_RALSO (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Ralstonia solanacearum GN=rlmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.965e-12
Identity = 52/162 (32.10%), Postives = 75/162 (46.30%), Query Frame = 2
Query:   26 LNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            L  + G   HQG+V  A  L +     LD +    +   L + LD VTDP NLGA +R A   GA  V+     S  ++  V+K ++G+ E V      N+ + L    + G  V+ G+       L       P  LV+G+EG G+R L   +C  LV IP
Sbjct:   60 LRGIAGTDRHQGVVAKAEALSLAL--NLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVI-GTADEAEQDLYRADFKGPIALVMGAEGEGMRRLTRETCDTLVSIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_BLOFL (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Blochmannia floridanus GN=rlmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.097e-12
Identity = 50/171 (29.24%), Postives = 82/171 (47.95%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I+E ++  LN+      HQG++ +  P+  +    L   +    +   L + LD +TDP NLGA IRSA   G   +++    SA ++  V K ++GS + V      N+ + L    +    ++G  + S  +  N      P  LV+GSE +G+R L   +C  LV IP
Sbjct:   50 IQECTRRVLNIKSMKSAHQGIIAEVIPMPALNEDYLLHFLKTKNNIIPLLLVLDGITDPHNLGACIRSADAAGVHMIIVPRDRSANVNATVRKVASGSSDRVPFVRVTNLSRTLKLLKKYNIYIVGSVLRSNQILFN-TRLIDPIALVMGSESSGIRRLTRENCDKLVHIP 219          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_NEIMB (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Neisseria meningitidis serogroup B GN=rlmB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 2
Query:   26 LNMVVGNRPHQGLV--LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            LN +     HQG+V  +DAS   +     L+ +  +  +  L + LD +TDP NLGA +R+A   G   V+     SA L+  VSK + G+ E V      N+ + L    E G  ++G  +S ++  L           V+G+EG G+R L    C  LV IP
Sbjct:   60 LNAISKGARHQGVVGFIDASKNHV----HLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGES-DLYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_NEIMA (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Neisseria meningitidis serogroup A GN=rlmB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 52/164 (31.71%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   26 LNMVVGNRPHQGLV--LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            LN +     HQG+V  +DAS   +     L+ +  +  +  L + LD +TDP NLGA +R+A   G   V+     SA L+  VSK ++G+ E V      N+ + L    E G  ++G  +   A  L           V+G+EG G+R L    C  LV IP
Sbjct:   60 LNAISKGARHQGVVGFIDASKNHV----HLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNA-DLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_ERWCT (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Erwinia carotovora subsp. atroseptica GN=rlmB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD-PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I+  S+  L+    +  HQG+V  A   E  K +E D P   D  +    + LD VTDP NLGA +R+A   G   V++    SA L+  V K + G+ E + +    N+ + + +    N W V  G+       L +     P  LV+G+EG G+R L    C  L+ IP
Sbjct:   50 IQVASRQWLDKQAEDAVHQGIV--AKVKEGRKYQENDLPAMLDNLEMPFLLILDGVTDPHNLGACLRNADGAGVHAVIVPRDRSAQLNATVKKVACGAAETIPVISVTNLARTMRLLQERNIWIV--GTAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIP 217          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_NITEU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Nitrosomonas europaea GN=rlmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 47/159 (29.56%), Postives = 76/159 (47.80%), Query Frame = 2
Query:   35 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + G   HQG+    + L   +   L+ +     + +L + LD V DP NLGA +R A  FG   VV+    +  LS  V K ++G+++ V      N+ + L    E G  ++G +  +    L+ +   +P   VLG+E  G+R L   +C  LV IP
Sbjct:   63 MTGTTRHQGVAAHVTKLR--RYATLEDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAVVVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVGTAADAPDT-LDSVTLTRPLAWVLGAEDGGMRRLTREACDLLVSIP 218          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: RLMB_XANAC (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Xanthomonas axonopodis pv. citri GN=rlmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.701e-11
Identity = 52/171 (30.41%), Postives = 77/171 (45.03%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            ++  +   L+ V G   HQG+    +   +    EL+ +       +L + LD V DP NLGA +RSA   G + VV+    SA ++  V K SAG+ + + +    N+ + L    + G W  L G        L  +       LVLG E  GLR L    C  LV+IP
Sbjct:   53 VRRVNTQALDGVGGQVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVW--LYGLAGEAEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIP 221          
The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RLMB_RALSO6.965e-1232.1023S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_BLOFL9.097e-1229.2423S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_NEIMB1.188e-1131.7123S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_NEIMA1.188e-1131.7123S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_ERWCT2.647e-1131.4023S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_NITEU5.897e-1129.5623S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_XANAC7.701e-1130.4123S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bp
CATAAAGGAAACCTCAAAGCATGATCTCAATATGGTTGTTGGTAATCGCC
CTCATCAGGGTCTTGTTCTTGACGCATCTCCATTGGAGATGGTCAAAATA
AAAGAATTGGACCCTATTTCGGCTGATGAAGATCAAGCCTCTCTTTGGGT
AGCACTGGATGAGGTGACAGATCCTCAAAATTTGGGGGCCATCATTAGGT
CTGCTTACTTCTTTGGAGCTTCAGGGGTGGTTTTGTGTGCAAAAAATTCA
GCACCATTGAGTGGTGTTGTGAGCAAGGCTAGTGCAGGGTCACTTGAATT
GGTGGAGCTGAGGTACTGTAACAATATGATGCAGTTCTTGGTATCATCAG
CTGAAAATGGCTGGCGAGTCCTTGGCGGTTCAGTTTCTTCAAAAGCAGTT
CCCTTGAATGAGATTCCTCCTGGTCAGCCAACTATTCTAGTTTTGGGCAG
TGAGGGCACAGGATTGAGGCCTTTGGTGGAGAGATCCTGTACACATTTGG
TTAGGATCCCTGGAAACATTCCAGATGATGTAACTGCTGGCAAAATTGAT
GATGTGGAAGCTAATGGAAACCACGGGTCCACACAACCATTACCGCCCAC
TTACAAGATGTGGCGAACTTTGAGGGCACAGCCCCGCGGTGGCGCTGGAG
ACAGACCGCGGAGAATGGAACCCTGGCTGATGCAAACGAAGACACAGTGA
ACGCGAACCCACGCTAGATCAACCACAATCTAATGGGCCACACGCCGCCG
AGATCAAGACAAAGTCAACCACACAGGAATGAACGGCACGTCGCCCGCCG
GGCCCAATCGGCACGCGCTCTCACCTCGAGACTCAGAAATTAGAAGTCAG
GTAGAGGATACGACCGAGAAACACGAGAATACGAACACTAAGGAAGATCG
GGGAAGGCGCGCCCCCA
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