EY684783

Overview
NameEY684783
Unique NameEY684783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2AF2_DROME (Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.871e-25
Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 1
Query:   13 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            E+ +  FF+Q M  +G   A  G  V+   IN +K FAF+E R+++E + AMA DGI  +G ++++RRP DY P       PG   +P +  A V  +SG I     + P ++F+GGLP Y  +  +KEL+ +FG L  F+LVKD  TG SKGY FC Y
Sbjct:  106 EEEMMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEEL (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.110e-22
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 1
Query:   10 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVYPNP 489
            NE+A+  FF+Q M   G   A PG+ ++   IN +K FAF+E R+++E +  MA DGI F G  ++VRRP DY P+        Q + ++N + + +++  +  A   +++F+GGLP Y TE  +KEL+ +FG L  F L  D   GNSKGY F  Y +P
Sbjct:  196 NEEAMLDFFNQQMHLCGLAQA-PGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMPVSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDP 341          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEBR (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.110e-22
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   10 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVYPNP 489
            NE+A+  FF+Q M       A PG+ ++   IN +K FAF+E R+++E +  MA DGI F G  ++VRRP DY P+        Q + ++N A + ++S  +  A   +++F+GGLP Y TE  +KEL+ +FG L  F L  D   GNSKGY F  Y +P
Sbjct:  187 NEEAMLDFFNQQMHLCNLAQA-PGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDP 332          
The following BLAST results are available for this feature:
BLAST of EY684783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
U2AF2_DROME6.871e-2541.51Splicing factor U2AF 50 kDa subunit OS=Drosophila ... [more]
U2AF2_CAEEL7.110e-2239.38Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]
U2AF2_CAEBR7.110e-2240.00Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684783 ID=EY684783; Name=EY684783; organism=Citrus sinensis; type=EST; length=891bp
CCTTTGGCTAATGAACAGGCAATTGCTACATTCTTTAGCCAAGTTATGAC
TGCTATTGGAGGAAATTCTGCTGGTCCTGGTGATGCAGTAGTGAATGTTT
ACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAA
GAAGCGAGTAATGCAATGGCATTAGATGGGATTATATTTGAGGGGGTTGC
TGTGAGGGTAAGAAGACCTACGGATTACAACCCTACATTAGCTGCAGCAC
TTGGTCCAGGCCAACCAAGTCCGAATCTTAACTTGGCAGCTGTTGGACTT
GCATCAGGTGCAATTGGTGGAGCAGAGGGACCTGATCGGGTCTTTGTGGG
TGGATTACCATACTACTTCACTGAAACTCACATAAAAGAGTTGGTCGAGG
CTTTTGGGACTCTTCATGGTTTTGACCTCGTTAAGGATAGAGACACGGGG
AACTCTAAAGGATATGGTTTCTGTGTCTATCCAAATCCACCGGAGGAAAA
ACCTAAGCATGTGCAGACTCAAGATAGGTTGAACATGTAAGGAACAGATT
CACCTCGATCCACGAACCTCCCGCCCGCCAGTCCGAGGACCACAAACTGA
AACCACACGCACCCCGTAACACAGACTGCGATGAGCTATACAGAATCAGG
AACACAGCAGTAGCGAAATAGGCCGACCCAACCCGGAGACCGGCGGGAGA
AGGAGCGCGGGAACGGAACGAGGCCACCGACCACCGCACGACCGACAGCC
AACACAATTGTGCCCGCCGACACACGGTCATAGATCCACGCCTCCCTGGG
CACCCGCGTCCCGAGACGAAAGGGCACAAGCCGCCCAGCCCGCCCCGCCC
AAGGACAGACGGAGACGGACCAACAGCACGCCCAAGACGCG
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