EY684781

Overview
NameEY684781
Unique NameEY684781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length986
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_CHRVO (Beta-hexosaminidase OS=Chromobacterium violaceum GN=nagZ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.725e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = -3 
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAHVI 195
            GKH+PGHG+ E DSH  +P D+R+L QI  +DLVPFARL+   + AVMPAHV+
Sbjct:  169 GKHYPGHGYVEGDSHHLMPQDDRTLAQIEQDDLVPFARLADAGMGAVMPAHVL 221
[Close]
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_NEIMB (Beta-hexosaminidase OS=Neisseria meningitidis serogroup B GN=nagZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.555e-11
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = -3 
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAHVI 195
            GKHFPGHG+ E DSH+ +P D RSL ++   DL PF  +S++ +AAVMPAHV+
Sbjct:  173 GKHFPGHGFVEGDSHLVLPEDWRSLSELETADLAPFRIMSREGMAAVMPAHVV 225
The following BLAST results are available for this feature:
BLAST of EY684781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NAGZ_CHRVO1.725e-1160.38Beta-hexosaminidase OS=Chromobacterium violaceum G... [more]
NAGZ_NEIMB6.555e-1156.60Beta-hexosaminidase OS=Neisseria meningitidis sero... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-E12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684781 ID=EY684781; Name=EY684781; organism=Citrus sinensis; type=EST; length=986bp
GCCGCAGTACCGGTCGGATTCCCGGGTCGACCTGTGGATAATCACGTGGG
CCGGCATGACGGCCGCCAACTGCTTGCTCAGGCGTGCAAAAGGCACCAGG
TCATTGGCGCGAATCTGTTCCAGGCTGCGCTCATCATTGGGAATCGCGAC
GTGGGAATCGGCTTCGGCCCAGCCGTGGCCGGGGAAGTGTTTGCCGGNAG
CGGCCGTGCGGGCGCTGGTCGGTCCGCGCCCTCCCCGCCCCCGCCCGCCC
CGCGGCGCCCTCGGCCGTCGCCTTCGCNCGCCCGCCCCCCGGCCGGGCGC
GGGCCCCTGGCGCCGCCCGCGCGCGCCCCCGCCGCGCGGGCGGCGCGCCG
CCGGCCGCTCGCGCGGCCCGCGGCGGCGCGGGCCGCGGCCGGCGGCGGCT
GGCCGCCCCCGCCGCGCCCCCCCCCCCGGCGCCCCCCCCCCCCCGGGGGG
GGGGGGGCGGGCCCCCCGCCCCTCCGCCGCGCCGCGCCGCCCCTCCCCCC
CCGGGGCCCGGGGCCCGTGCGCCCCGGCGCTGCGGGCGCGGCGCGCGCCC
CCCCCGGCGGCGCCGCCGCCCCGGCCCGCCTCCGCGCCCGCGCGGCCGCC
CCGCCCCGCGCCCGCGGGGCCCTCGCGCGCTGCGGCGCGTGCTGCCGCCG
GCCCCCGCGCGCCGGCTCCGCGCGGCCCCCCCGCGGCCCCGGCCGCGGGC
CGCCGCGCCCCCCGGCGCGCGCCGCGCGCCGGCCGCCCGCGCGGCGCGCC
GNCGCGCGGCGGCCGGCCTCGCGCGCGGCCGGCCCGGGGCGCGGGCGCCN
GCCGCCCGCGCGTCGGCCGCCGGCGCGGCGGGCGGGGGGCGCGGGGCGCC
CCCTTCCGCGCCGCGCGCGCTCGCGCCCNCCCCCGCGGCCCCCCCCGCCG
CGCGCGCGTGGCGGGCCGCCCGGGGCGCGCCCGCGGCGGCGGCCCGGCCG
GCGCCGGTGCGCGCGGCCGCGCCGCGGGCGGGCGCC
back to top