EY684779

Overview
NameEY684779
Unique NameEY684779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_DANRE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.098e-38
Identity = 66/100 (66.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL 303
            QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD++T++RL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++ +
Sbjct:  171 QSVEDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEDRLSKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMV 270          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_RECAM (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Reclinomonas americana GN=SDH2 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.873e-38
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQ 294
            QS+ DR KLDG+YEC+LCACCSTSCPSYWW S+ YLGPA LL A RWI DSRD+ T+ERL+ ++D FKLYRCHTILNC + CPK LNP + I  IKQ
Sbjct:  137 QSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQAYRWIVDSRDQGTRERLQYLEDPFKLYRCHTILNCTKTCPKHLNPAQAIAKIKQ 233          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_RAT (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.873e-38
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRDE+T+ERL  + D F LYRCHTI+NC + CPKGLNPGK I  IK++
Sbjct:  174 QSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDEFTEERLAKLQDPFSLYRCHTIMNCTQTCPKGLNPGKAIAEIKKM 271          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_DROME (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.446e-38
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS +DR+KLDG+YECILCACCSTSCPSYWW +E YLGPA L+ A RWI DSRDE + ERL  + D F +YRCHTI+NC R CPKGLNPG+ I  IK+L
Sbjct:  181 QSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKL 278          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_HUMAN (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Homo sapiens GN=SDHB PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS ++R KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRD++T+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct:  172 QSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 269          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_BOVIN (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Bos taurus GN=SDHB PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRD++T+ERL  + D F LYRCHTI+NC + CPKGLNPGK I  IK++
Sbjct:  172 QSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTQTCPKGLNPGKAIAEIKKM 269          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_RICFE (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia felis GN=sdhB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.449e-38
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            QS K R KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A RWI+DSRD++T ERLE ++D  KLYRCHTI+NC + CPKGLNP K I  IK L  +R
Sbjct:  157 QSIKGREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDHTGERLEDLEDPSKLYRCHTIMNCTKTCPKGLNPAKAIGKIKSLIAER 258          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_SCHPO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh2 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.294e-38
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS+ DRAKLDG+YECILCACCSTSCPSYWW SE YLGPA L+ A RWI DSRD+ T +RL+ + +   +YRCHTI+NCAR CPKGLNPG  I  +K L
Sbjct:  151 QSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQATAKRLDVMQNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVKAL 248          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_MOUSE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mus musculus GN=Sdhb PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.294e-38
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRD++T+ERL  + D F +YRCHTI+NC + CPKGLNPGK I  IK++
Sbjct:  174 QSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSVYRCHTIMNCTQTCPKGLNPGKAIAEIKKM 271          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_PIG (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Sus scrofa GN=SDHB PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.704e-37
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS ++R KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRD++T+ERL  + D F LYRCHTI+NC   CPKGLNPGK I  IK++
Sbjct:  172 QSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKM 269          
The following BLAST results are available for this feature:
BLAST of EY684779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DHSB_DANRE1.098e-3866.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RECAM1.873e-3870.10Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RAT1.873e-3868.37Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_DROME2.446e-3869.39Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_HUMAN4.172e-3867.35Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_BOVIN4.172e-3867.35Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RICFE5.449e-3868.63Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_SCHPO9.294e-3868.37Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_MOUSE9.294e-3866.33Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_PIG2.704e-3766.33Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-E10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684779 ID=EY684779; Name=EY684779; organism=Citrus sinensis; type=EST; length=895bp
CCGCAGAGTAAGAAGGACAGGGCCAAGCTGGATGGGATGTACGAGTGTAT
TCTGTGCGCCTGCTGTAGCACATCTTGCCCCAGTTATTGGTGGACCTCTG
AAGCCTATTTGGGCCCCGCTGCTTTGCTTCATGCTAATAGGTGGATAAGT
GATAGCCGTGATGAATATACCAAGGAACGTCTGGAAGCAATAGATGATGA
GTTTAAGCTGTACCGCTGCCATACCATATTGAACTGTGCCCGTGCCTGCC
CCAAGGGCTTGAACCCTGGAAAGCAGATAATAAATATCAAGCAACTTCAG
CTAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTGAATCAAGATGGTG
TGGATTTGACCAGTTAGTTACCTGCCAACTATATGGTTTGAGTTAATAAT
TTGCACATTGATTGTATTATTCATCCCATTTGTACTTAGATTGGGATCAA
ATTTGAAGCTTCTTGTCTTTTTTATGCCTAATAATAATTTATAAAACTTA
TTGGATCCGTACTTTCTTCCATCAGGTGAAAAACAAATAAACATTACTGT
TTTTGACCCAGGATACCAAATTAACTGGCCAATGTGGAAAAACCACATTG
GCTATTTAACCGGACGCCCGACACGCACCAACCACCCCGCCACCGCGCAC
CCCAACCTCTACCAACCCCACTCCCACCCCACGTCGAAACTCCCTTCCCC
GAAAGCCACGGTCGCGCCCCCCCCCGATAGCGCCGAAAGCCCACATCGCC
ACGACGACCCCGCCCGCACTCGACAAATCACCCAACCTAGCCAAGCAACA
GAACCCCACACTGCAGGACAAGCAACCGGGCCCCACCACACACCGCCCCC
CCCTATCAAACGCAATGGCAGGAGACCAAGAGCCACAGCAGCCCC
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