EY684779

Overview
NameEY684779
Unique NameEY684779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_CAEBR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis briggsae GN=sdhb-1 PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.655e-34
Identity = 60/98 (61.22%), Postives = 74/98 (75.51%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS  +R +LDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD+Y +ERL  + D F  ++CHTI+NC + CPK LNP K I  IK L
Sbjct:  170 QSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYAQERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSL 267          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_CAEEL (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis elegans GN=sdhb-1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.234e-34
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS  +R +LDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD+Y  ERL  + D F  ++CHTI+NC + CPK LNP K I  IK L
Sbjct:  186 QSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSL 283          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_ASHGO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ashbya gossypii GN=SDH2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.063e-33
Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQ 294
            QS  DR KLDG+YECILCACCST+CPSYWW +E YLGPA L+ A RW+ DSRD     R E + +   +YRCHTI+NC R CPKGLNPGK I  IK+
Sbjct:  160 QSIADRKKLDGLYECILCACCSTACPSYWWNNEQYLGPAVLMQAYRWMVDSRDGAGAGRREQLQNAMSVYRCHTIMNCTRTCPKGLNPGKAIAEIKK 256          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_SALTY (Succinate dehydrogenase iron-sulfur subunit OS=Salmonella typhimurium GN=sdhB PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.698e-31
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            Q  + R KLDG+YECILCACCSTSCPS+WW  + ++GPA LL A R++ DSRD  T  RLE + D F ++RCH+I+NC   CPKGLNP + I +IK + L+R
Sbjct:  135 QMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLEGMSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_COXBU (Succinate dehydrogenase iron-sulfur subunit OS=Coxiella burnetii GN=sdhB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.217e-31
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 306
            QS ++RAKLDG+YECILCACCS+SCPSYWW  + ++GPA LL + R+I+DSRD   KERL+A+ D + ++RC TI++CA  CPK LNP K I  I+   L+
Sbjct:  129 QSPEERAKLDGLYECILCACCSSSCPSYWWNPDKFIGPAGLLWSYRFIADSRDSKEKERLDAMKDPYSVFRCRTIMDCATVCPKNLNPAKAIRKIRTEMLQ 229          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_ECOLI (Succinate dehydrogenase iron-sulfur subunit OS=Escherichia coli (strain K12) GN=sdhB PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.896e-31
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            Q  + R KLDG+YECILCACCSTSCPS+WW  + ++GPA LL A R++ DSRD  T  RL+ + D F ++RCH+I+NC   CPKGLNP + I +IK + L+R
Sbjct:  135 QMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236          
The following BLAST results are available for this feature:
BLAST of EY684779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DHSB_CAEBR3.655e-3461.22Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_CAEEL6.234e-3461.22Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_ASHGO1.063e-3363.92Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_SALTY1.698e-3156.86Succinate dehydrogenase iron-sulfur subunit OS=Sal... [more]
DHSB_COXBU2.217e-3157.43Succinate dehydrogenase iron-sulfur subunit OS=Cox... [more]
DHSB_ECOLI2.896e-3155.88Succinate dehydrogenase iron-sulfur subunit OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-E10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684779 ID=EY684779; Name=EY684779; organism=Citrus sinensis; type=EST; length=895bp
CCGCAGAGTAAGAAGGACAGGGCCAAGCTGGATGGGATGTACGAGTGTAT
TCTGTGCGCCTGCTGTAGCACATCTTGCCCCAGTTATTGGTGGACCTCTG
AAGCCTATTTGGGCCCCGCTGCTTTGCTTCATGCTAATAGGTGGATAAGT
GATAGCCGTGATGAATATACCAAGGAACGTCTGGAAGCAATAGATGATGA
GTTTAAGCTGTACCGCTGCCATACCATATTGAACTGTGCCCGTGCCTGCC
CCAAGGGCTTGAACCCTGGAAAGCAGATAATAAATATCAAGCAACTTCAG
CTAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTGAATCAAGATGGTG
TGGATTTGACCAGTTAGTTACCTGCCAACTATATGGTTTGAGTTAATAAT
TTGCACATTGATTGTATTATTCATCCCATTTGTACTTAGATTGGGATCAA
ATTTGAAGCTTCTTGTCTTTTTTATGCCTAATAATAATTTATAAAACTTA
TTGGATCCGTACTTTCTTCCATCAGGTGAAAAACAAATAAACATTACTGT
TTTTGACCCAGGATACCAAATTAACTGGCCAATGTGGAAAAACCACATTG
GCTATTTAACCGGACGCCCGACACGCACCAACCACCCCGCCACCGCGCAC
CCCAACCTCTACCAACCCCACTCCCACCCCACGTCGAAACTCCCTTCCCC
GAAAGCCACGGTCGCGCCCCCCCCCGATAGCGCCGAAAGCCCACATCGCC
ACGACGACCCCGCCCGCACTCGACAAATCACCCAACCTAGCCAAGCAACA
GAACCCCACACTGCAGGACAAGCAACCGGGCCCCACCACACACCGCCCCC
CCCTATCAAACGCAATGGCAGGAGACCAAGAGCCACAGCAGCCCC
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