EY684690

Overview
NameEY684690
Unique NameEY684690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684690_ssr78 microsatellite EY684690_ssr78:78..92. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684690_ssr180 microsatellite EY684690_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684690 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  279 AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLRHNGSH---IGGEFGEYKPLHSSVDAKLAAICEN 557
            +K +RGVRQR WG WV+EIR P  + R+WLGTFDT                G  A+ NFP ++ NGS+   I       K L   ++AKL   C++
Sbjct:    4 SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKD 99          
BLAST of EY684690 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  273 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLRH 470
            K   +YRG+R+R WGKW AEIR P+   R+WLGTF+T               RGD A+LNFP+L H
Sbjct:   74 KRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHH 139          
BLAST of EY684690 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  282 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNL 464
            K YRG+R+R WGKWVAEIR P  R+RLWLG++ T               RG  ARLNFP+L
Sbjct:   29 KPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDL 89          
BLAST of EY684690 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 46/137 (33.58%), Postives = 63/137 (45.99%), Query Frame = 3
Query:  282 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLR-----HNGSHIGGEFG------EYKPLHSSVDAKLAAIC-----ENLAETQKLGTSKKEKQSNSAQ---KKHPDP 635
            K Y+G+R R WGKWVAEIR P  R+R+WLG++ T               RG  ARLNFP L       NG   GG+        +   + + VDA  A +      EN  + +K+   +K    +  +    K PDP
Sbjct:   26 KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSGNGSLERVDLNKLPDP 162          
BLAST of EY684690 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 34/76 (44.74%), Postives = 41/76 (53.95%), Query Frame = 3
Query:  273 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFG 500
            K  K Y+G+R R WGKWVAEIR P  R+R+WLG++ T               RG  ARLNFP L    +  GG  G
Sbjct:   25 KRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVTGGGGG 100          
BLAST of EY684690 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 42/109 (38.53%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  288 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSA 614
            Y+GVR+R WGKWV+EIRLP +R R+WLG++DT               RG+ A+ NFP+   N   I G     + L  S   + AA   N AE    G +  E +  SA
Sbjct:   12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPD---NPPVISGG----RNLSRSEIREAAARFANSAEDDSSGGAGYEIRQESA 113          
The following BLAST results are available for this feature:
BLAST of EY684690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SHN3_ARATH6.844e-1239.58Ethylene-responsive transcription factor SHINE 3 O... [more]
RAP23_ARATH8.939e-1248.48Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP21_ARATH4.436e-1152.46Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF08_ARATH5.794e-1133.58Ethylene-responsive transcription factor ERF008 OS... [more]
RA210_ARATH7.567e-1144.74Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF17_ARATH9.883e-1138.53Ethylene-responsive transcription factor ERF017 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-C11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684690 ID=EY684690; Name=EY684690; organism=Citrus sinensis; type=EST; length=767bp
CCACGCGTCCGGATGCGTGCTCCACGTCGTCAACTCATCTATTTGCTAAT
GGGTTGTCGATGAATGACTTAGGTCTCCAGCAGCAGCAGCAGCATTATCA
ACAGGGCACTGTTGGGCTAAATAACCTTAACCTATTCCAGATTCAGCAGA
TCCAGCTTCAAAATCAAAACTTTTGGCCACAGCAGCAGCAGAAAAGTCAT
CTTTACCCTCAGGGTTTGAACTTCCTCTCCCCGAAGCCAGTCCCGATGAA
GACGGTGGGCTGTCCTCCGCCCAAGCCGGCGAAGCTTTACAGAGGAGTTA
GACAGCGTCATTGGGGCAAATGGGTCGCTGAGATCCGCTTGCCCAAGAAC
CGGACTCGGCTCTGGCTCGGCACTTTTGACACGGCCGAAGAAGCCGCGTT
GGCCTACGATAAGGCGGCCTACAAGCTACGTGGCGACTTCGCTCGGCTCA
ACTTCCCTAACCTACGTCACAATGGGTCTCACATCGGTGGCGAGTTCGGC
GAGTACAAGCCTCTTCATTCTTCAGTTGATGCGAAATTGGCAGCCATTTG
TGAGAACTTGGCCGAGACGCAAAAACTGGGGACTAGTAAGAAAGAGAAAC
AAAGTAACTCCGCCCAAAAGAAACACCCCGATCCGGGAATAAGAAAATTG
ACGTCCTCGAAAGACCCGGAGTCGAGGATCAGCGGGAACAAAAGAACGGC
AATACAGAGTCCACACTCATGCCGGACCGACGATCCTGGGCTGCCCAACT
CAGAGGCTCCCACCCAA
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