EY684688

Overview
NameEY684688
Unique NameEY684688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 54/154 (35.06%), Postives = 91/154 (59.09%), Query Frame = 2
Query:  110 LWEAFLNWLQSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRK 568
            ++  F + LQ L  +K+  +L  +GL NAGKT+L+ ++      +  +PT+     + T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L+   +++ +P+L+LGNKID+  A+S+E L E  GL   T  K
Sbjct:    8 IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGK 160          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 52/152 (34.21%), Postives = 85/152 (55.92%), Query Frame = 2
Query:  155 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIK-----LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRKVVAT*FHAR 595
            Q + + ++GL +AGKT+++  +    +  + +PT+GFN  K    N T K      WD+GGQ + R +W+ Y R    I+YVVD+ D D L  +++ELH +   A   G PLLV+ NK D P +L   ++ +Q+ L  +    + AT +H +
Sbjct:   12 QSLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHEL----IPATTYHVQ 158          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 52/152 (34.21%), Postives = 85/152 (55.92%), Query Frame = 2
Query:  155 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIK-----LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRKVVAT*FHAR 595
            Q + + ++GL +AGKT+++  +    +  + +PT+GFN  K    N T K      WD+GGQ + R +W+ Y R    I+YVVD+ D D L  +++ELH +   A   G PLLV+ NK D P +L   ++ +Q+ L  +    + AT +H +
Sbjct:   12 QSLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHEL----IPATTYHVQ 158          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  155 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++        + +WD+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL++  L+G+P+L+  NK D   A    ++ E + L +I DR
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 49/148 (33.11%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  122 FLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            F +  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LLV  NK D P A++  ++ +++GL S+ +R
Sbjct:    5 FGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 49/148 (33.11%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  122 FLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            F +  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LLV  NK D P A++  ++ +++GL S+ +R
Sbjct:    5 FGSLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.510e-19
Identity = 50/154 (32.47%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            MGL+ + L     LF K+++ + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ + R +W  Y      +++VVD+ D + +  +R  LH ++N+  L    +LV  NK D P A+S  ++ E++ L +I +R
Sbjct:    1 MGLYVSRL--FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRER 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 2
Query:  125 LNWLQSLF-----FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            +NW   +        +  +L  +GL NAGKT+L++++     +  + PT      +   GN     +DLGG  + R +W+ Y   VS IV++VDA D++  P S++EL  LL    L+ +P LVLGNKID P A+S+++L  Q+GL   T +
Sbjct:    4 INWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  125 LNWLQSLF-----FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            +NW   +        +  +L  +GL NAGKT+L++++     +  + PT      +   GN     +DLGG  + R +W+ Y   VS IV++VDA DY+  P S++EL  LL    L  +P L+LGNKID P A+S+++L  Q+GL   T +
Sbjct:    4 INWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 51/151 (33.77%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  119 AFLNWLQSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRK 568
            +F + + SLF  K+E  + +IGL  AGK++L+  +  G      IPT+GFN+      N+++ +WD+GGQ + R +W+ Y    +A+++VVD+ D + +   + E+ +LL +  L G  +LV  NK D   A++  +++  + L SI DRK
Sbjct:   11 SFFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVST-IPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRK 160          
The following BLAST results are available for this feature:
BLAST of EY684688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
SAR1A_MOUSE1.156e-1935.06GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
ARL4C_MOUSE1.156e-1934.21ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN1.156e-1934.21ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]
ARL3_TAEGU1.156e-1935.04ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARF12_CAEEL1.156e-1933.11ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR1.156e-1933.11ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF1_PLAFO1.510e-1932.47ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
SAR1_EMENI1.973e-1935.53Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_ASPTN1.973e-1935.53Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
ARFJ_DICDI1.973e-1933.77ADP-ribosylation factor J OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-C09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684688 ID=EY684688; Name=EY684688; organism=Citrus sinensis; type=EST; length=763bp
AATTGTAGGAGAAAAGAGAAGAAGCAAGAAAAGTTTTTTCGCTTTTTCCC
AGCTTTTATACTTCAAAGGCGAAACCCTAGCTTCTTATTTTGTCGAATAA
AAGATGGGATTATGGGAAGCTTTTCTCAACTGGCTTCAAAGTCTCTTCTT
TAAACAAGAAATGGAGCTATCTTTGATAGGGCTTCAGAATGCAGGCAAGA
CATCCCTTGTGAATGTTATCGCAACTGGTGGATATAGTGAAGATATGATC
CCAACAGTAGGATTTAATATGAGGAAAGAGACTAAGGGGAATGTCACAAT
AAAGCTGTGGGATCTTGGAGGCCAACCACGGTTTCGCAGTATGTGGGAGA
GATACTGTCGTGCAGTTTCAGCTATTGTTTACGTTGTTGATGCTGCTGAT
TATGATAACTTGCCTGCGTCAAGAAGTGAACTCCATGACTTGTTAAATAA
AGCCTCGCTGAATGGTATCCCATTGCTGGTACTGGGAAACAAGATTGATA
AACCATAAGCCTTGTCTAAAGAGGATCTGATGGAACAAATGGGGCTGAAG
TCCATTACCGATAGAAAAGTTGTTGCTACATGATTTCATGCAAGAACTCT
ACCAACATTGAAAAGGCTATTGATTGGCCTGTAAAGCATTCAAAAACCAA
AGAGTGAAGTTTCTACCCTCTAGTATAGACACCAATGGGAAGCCTGTTAT
ACAGAACTTGGAATTATGGAAAAATTACAAGGAAGATGAATTGGTAAAGG
CACCGTCGCACCA
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