EY684680

Overview
NameEY684680
Unique NameEY684680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684680 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  286 TALFFLEKDLHPGMKMNLHFTQTSNGAT-FLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKK--CQAISTEVKKGTQMQT 636
            T +FF E+ +  G ++   F   +  A  FL RQ A S PF++  LP +   F V   S     M+ T++ CE P I GE K+CATSLE++++ +   LG +      ST  + G  +QT
Sbjct:  166 TTVFFHEEAVRVGKRLPFRFPPATPAALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTSTLPRAGAPLQT 285          
BLAST of EY684680 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 51/153 (33.33%), Postives = 71/153 (46.41%), Query Frame = 1
Query:  295 FFLEKDLHPGMKMNL-HFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKKCQAISTEVKKGTQMQTIQSPLE-*NTGQLTNQI-VQKPNYPYH*FYLPCNKTTR 744
            FF E  L  G  M +          TFL R   K+ PFSS  + EI+  F     S  A I+ + + ECE P   GE K C  S E MIDF+TS LG+     +TE   G++ + +   +   N G +T  +   +  YPY  +Y  C+   R
Sbjct:  409 FFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYY--CHSVPR 559          
BLAST of EY684680 vs. ExPASy Swiss-Prot
Match: BURP7_ORYSJ (BURP domain-containing protein 7 OS=Oryza sativa subsp. japonica GN=BURP7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  292 LFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIM 477
            +FFLEKDL PG K+ LHFT+ + GA  L R  A S P +++KLPEI +Q SV  GS  A+ M
Sbjct:   64 VFFLEKDLFPGSKLTLHFTRATAGAALLPRGRADSVPLATEKLPEILSQLSVPAGSPAADAM 125          
The following BLAST results are available for this feature:
BLAST of EY684680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RAF1A_WHEAT3.081e-1235.00Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
Y639_ARATH8.964e-1233.33Probable polygalacturonase non-catalytic subunit A... [more]
BURP7_ORYSJ5.811e-1153.23BURP domain-containing protein 7 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-B09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684680 ID=EY684680; Name=EY684680; organism=Citrus sinensis; type=EST; length=771bp
CAGCCAGATGTGCTGGAAGACAAAAGCACCTCTGTCAACGTAGGGAAGGG
TGGTGTCAATGTGGATGCAGGGAAAGGAAAGCCCGGTGGTGGCACCCATG
TGAATGTTGGGGGTAAGGGCGTTGGTGTAAACACTGGAAAGCCTGACAAA
AGAACCAGTGTTGGTGTTGGCAAAGGAGGAGTATCCGTAAGTACAGGACA
CAAGGGAAAGCCAGTTTATGTTGGAGTAAGCCCATTCAACTATGTATATG
CTGCAAATGAGAACCAACTCCATGATGACCCGAATACAGCTCTTTTCTTC
TTGGAAAAGGACTTGCATCCTGGCATGAAGATGAACTTGCACTTCACTCA
AACTTCAAATGGAGCAACTTTCTTATCTCGCCAAGCTGCCAAATCAACTC
CTTTCTCGTCTGACAAATTGCCTGAGATCTTTAACCAGTTTTCCGTGAAA
CCTGGATCAGTTGAAGCTGAAATAATGCAGAACACAATCAAAGAGTGTGA
AGACCCTGGCATTAAAGGAGAGCAAAAATATTGTGCAACTTCACTGGAGT
CAATGATTGACTTCAGCACTTCTAAGCTTGGAAAAAAGTGTCAGGCAATT
TCTACCGAGGTAAAAAAAGGAACCCAAATGCAAACTATTCAATCCCCACT
GGAGTGAAACACAGGCCAGCTGACAAACCAAATCGTCCAAAAGCCAAACT
ATCCATATCACTGATTCTACCTGCCATGCAACAAAACCACCAGGGCTTAA
ATGGTTACCTTTGCAAGGCGT
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