EY684666

Overview
NameEY684666
Unique NameEY684666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684666_ssr622 microsatellite EY684666_ssr622:622..631. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr841 microsatellite EY684666_ssr841:841..850. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr859 microsatellite EY684666_ssr859:859..868. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr576 microsatellite EY684666_ssr576:576..587. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.411e-35
Identity = 75/139 (53.96%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGFKA*ARGQGRE 429
            SHRK+E PRHGSL FLPRKRAARHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIE                  L S   V A +LS++    FY+NW +   K F   A+    E
Sbjct:    2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEE 140          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.011e-33
Identity = 69/129 (53.49%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHGS+ F P+KR+ARHRGKVKAFPKDD SKP  LT F+GYKAGMTHIVR+ ++PGSK++KKE  EAVT++E                  L +   V A +LSE+    FY+NW +   K F
Sbjct:    2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 71/129 (55.04%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRK+E PRHGSL +LPRKRAARHRGKVK+FPKDD  KP  LTA +GYKAGMT IVRD+++PG+K HKKE  EAVTII+                  L S   V A +LS++    FY+NW +   K F
Sbjct:    2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAVTI+E                    +   + A +LSE+A   FY NW +   K F
Sbjct:    2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.941e-33
Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNK 393
            SHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE                  L +   V A +LS+      Y+NW +  +K
Sbjct:    2 SHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSK 128          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 5.017e-33
Identity = 71/134 (52.99%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGFKA*AR 414
            SHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LTAF+ +KAGMTHIVR+V+KPGSK++KKE  EAVTI E                        V A +LSE     FY+NW     K F+  A+
Sbjct:    2 SHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAK 135          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 5.017e-33
Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAV+IIE                    +   + A +LSE+A   FY NW +   K F
Sbjct:    2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.460e-32
Identity = 69/129 (53.49%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRK+E PRHG LGFLPRKRAA  RG+VK+FPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++                  L S   V A +LS++    FY+NW +   K F
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.490e-32
Identity = 69/129 (53.49%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRK+E PRHG LGFLPRKRAA  RG+VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAV++++                  L S   V A +LS++    FY+NW +   K F
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 3.252e-32
Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRK+E PRHG LGFLPRKRAA  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++                  L S   V A +LS++    FY+NW +   K F
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAF 130          
The following BLAST results are available for this feature:
BLAST of EY684666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL3_ASPFU1.411e-3553.9660S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_DROME1.011e-3353.4960S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_NEUCR1.724e-3355.0460S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_CAEEL2.252e-3353.4960S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_DICDI2.941e-3355.9160S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_TOXCA5.017e-3352.9960S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEBR5.017e-3353.4960S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_CANGA1.460e-3253.4960S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_ASHGO2.490e-3253.4960S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_YEAST3.252e-3253.4960S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-H12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684666 ID=EY684666; Name=EY684666; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCT
TGGATTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGG
CTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTG
GGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGG
ATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAA
CCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCCA
GGACTTCACTCCACTGACAGAGTATCGGCCCCGAACCTTAGTGAGCAGGC
GACAACAACGTTCTACCAAAACTGGGGCAGACCCAATAACAAAGGATTCA
AAGCATAAGCCAGAGGACAAGGCAGAGAAGCATGGCTAAAGAAGAATCGA
AAATCGCCTCAAGCCCGAACCCGCACGCCCCACCCACCCGCCACCGCCCC
CACCACCCACCCCACCCCCACGCTCAACCCCCCCCACTCCCACCCCACTA
CCCACCCCCGCCCCCCCCCCCCCCGCCCACCCACCCACACCCACAACCAC
CCACCCCCAAGAAAAAGCCGCCGCGCGCGCGGGCCGGGAGGACGCGGCGC
GCCCCACTAGGACGGCCCCCACGCTCCCCGCGCGGCAGCACCCACGCCCC
AGCCAACGACACGACCGCGCCCGTCCACACCCCACCCCCCAGCCCATAGA
GGGCACCACTTCACCCGACGCCCACCCACCATCCCCACCACCGGCCCCCG
CACCCACGCGGCCACGAACGCTAGGCCTGCGGGCCAGTACCACACACACA
CCACCCAAACACACACACC
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