EY684666

Overview
NameEY684666
Unique NameEY684666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684666_ssr622 microsatellite EY684666_ssr622:622..631. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr841 microsatellite EY684666_ssr841:841..850. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr859 microsatellite EY684666_ssr859:859..868. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr576 microsatellite EY684666_ssr576:576..587. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.252e-32
Identity = 68/129 (52.71%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRK+E PRHGSLGFLPRKR+A  RG+VK+FPKD  SKP  LTAFLGYKAGMT +VRD+++PGSK+HK+E  EA T+++                  L S   V A +LSE+    FY+NW +   K F
Sbjct:    2 SHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.244e-32
Identity = 67/129 (51.94%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRK+E PRHG LGFLPRKRAA  RG+VK+FPKDD +KP  LT+FLGYKAGM+ IVRD+++PGSK HK+E  EAVT+++                  L S   V A +LS++    FY+NW +   K F
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.595e-31
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+E                  L S   + A +LS++    FY++W +   K F
Sbjct:    2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.595e-31
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+E                  L S   + A +LS++    FY++W +   K F
Sbjct:    2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR-DVEKPGSKLHKKETCEAVTIIE 249
            S RKF  PRHGSL F PRKR+   R    AFP DD S+P  LT F+ YKAGMTH+VR   +   +K   +E  +AVT++E
Sbjct:    2 SCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLE 81          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   19 RKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 249
            RK   PR GSLGF PRKRA+R   +VK +P+ D  KP  L AFLGY+AGMTH+    ++PG     KE    VTI+E
Sbjct:    4 RKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVE 79          
The following BLAST results are available for this feature:
BLAST of EY684666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL3_DEBHA3.252e-3252.7160S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_KLULA7.244e-3251.9460S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3L_HUMAN3.595e-3150.3960S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3L_BOVIN3.595e-3150.3960S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ENCCU6.812e-1451.2560S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_AERPE8.327e-1251.9550S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-H12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684666 ID=EY684666; Name=EY684666; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCT
TGGATTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGG
CTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTG
GGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGG
ATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAA
CCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCCA
GGACTTCACTCCACTGACAGAGTATCGGCCCCGAACCTTAGTGAGCAGGC
GACAACAACGTTCTACCAAAACTGGGGCAGACCCAATAACAAAGGATTCA
AAGCATAAGCCAGAGGACAAGGCAGAGAAGCATGGCTAAAGAAGAATCGA
AAATCGCCTCAAGCCCGAACCCGCACGCCCCACCCACCCGCCACCGCCCC
CACCACCCACCCCACCCCCACGCTCAACCCCCCCCACTCCCACCCCACTA
CCCACCCCCGCCCCCCCCCCCCCCGCCCACCCACCCACACCCACAACCAC
CCACCCCCAAGAAAAAGCCGCCGCGCGCGCGGGCCGGGAGGACGCGGCGC
GCCCCACTAGGACGGCCCCCACGCTCCCCGCGCGGCAGCACCCACGCCCC
AGCCAACGACACGACCGCGCCCGTCCACACCCCACCCCCCAGCCCATAGA
GGGCACCACTTCACCCGACGCCCACCCACCATCCCCACCACCGGCCCCCG
CACCCACGCGGCCACGAACGCTAGGCCTGCGGGCCAGTACCACACACACA
CCACCCAAACACACACACC
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