EY684663

Overview
NameEY684663
Unique NameEY684663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH1_RALSO (Pyridoxine/pyridoxamine 5'-phosphate oxidase 1 OS=Ralstonia solanacearum GN=pdxH1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   10 REKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            RE+F D    P+P +WGGYRL PE  EFWQG+ SRLHDRL+Y  Q   G   W I RL P
Sbjct:  158 RERFGDAP--PRPPHWGGYRLLPERIEFWQGRPSRLHDRLEYRRQPDGG---WHIVRLAP 212          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_PSYIN (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Psychromonas ingrahamii (strain 37) GN=pdxH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   13 EKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            EKF+ G  IP PE+WGGYR+ PE  EFWQG+  RLHDR  Y P E N    W + RL P
Sbjct:  164 EKFA-GKEIPLPEFWGGYRVIPESIEFWQGKADRLHDRFVYQPTEKN----WTVKRLNP 217          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_PROMM (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Prochlorococcus marinus (strain MIT 9313) GN=pdxH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSP-QEINGKRVWKINRLCP 189
            +  +F++G  +P PE+WGG+R+ P  FEFWQG+ +RL+DR +Y P Q+ N  + W+I RL P
Sbjct:  162 MNRRFANGE-VPLPEFWGGFRVAPTEFEFWQGRENRLNDRFRYRPQQDSNHAQTWRIERLAP 222          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_ACIBY (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter baumannii (strain AYE) GN=pdxH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            ++++     ++ KPE+WGGYRL+P+ +EFWQG+ +RLHDRL Y  ++I+G+  W ++RL P
Sbjct:  162 LQQQVQSREVLDKPEFWGGYRLQPDYYEFWQGRPNRLHDRLSY--EKIDGQ--WTLHRLMP 218          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_ACIBT (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=pdxH PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            ++++     ++ KPE+WGGYRL+P+ +EFWQG+ +RLHDRL Y  ++I+G+  W ++RL P
Sbjct:  162 LQQQVQSREVLDKPEFWGGYRLQPDYYEFWQGRPNRLHDRLSY--EKIDGQ--WTLHRLMP 218          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_ACIBS (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter baumannii (strain SDF) GN=pdxH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            ++++     ++ KPE+WGGYRL+P+ +EFWQG+ +RLHDRL Y  ++I+G+  W ++RL P
Sbjct:  162 LQQQVQSHEVLDKPEFWGGYRLQPDYYEFWQGRPNRLHDRLSY--EKIDGQ--WTLHRLMP 218          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_ACIBC (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter baumannii (strain ACICU) GN=pdxH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            ++++     ++ KPE+WGGYRL+P+ +EFWQG+ +RLHDRL Y  ++I+G+  W ++RL P
Sbjct:  162 LQQQVQSREVLDKPEFWGGYRLQPDYYEFWQGRPNRLHDRLSY--EKIDGQ--WTLHRLMP 218          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_ACIB5 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter baumannii (strain AB0057) GN=pdxH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            ++++     ++ KPE+WGGYRL+P+ +EFWQG+ +RLHDRL Y  ++I+G+  W ++RL P
Sbjct:  162 LQQQVQSREVLDKPEFWGGYRLQPDYYEFWQGRPNRLHDRLSY--EKIDGQ--WTLHRLMP 218          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_POLSQ (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=pdxH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   10 REKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            R K   G   P+PE+WGGYRL+P   EFWQG+ SRLHDR+ Y     N    WK+ RL P
Sbjct:  156 RFKSEFGEAPPRPEHWGGYRLRPTEMEFWQGRPSRLHDRIHYKLDGSN----WKVTRLAP 211          
The following BLAST results are available for this feature:
BLAST of EY684663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PDXH1_RALSO2.222e-1156.67Pyridoxine/pyridoxamine 5'-phosphate oxidase 1 OS=... [more]
PDXH_PSYIN3.790e-1155.93Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_PROMM3.790e-1146.77Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pr... [more]
PDXH_ACIBY6.465e-1145.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_ACIBT6.465e-1145.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_ACIBS6.465e-1145.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_ACIBC6.465e-1145.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_ACIB56.465e-1145.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_POLSQ8.444e-1151.67Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684663 ID=EY684663; Name=EY684663; organism=Citrus sinensis; type=EST; length=821bp
CCACGCGTCCGGGAAAAATTCTCTGATGGGAGTTTGATTCCAAAACCAGA
ATACTGGGGAGGATACAGGCTTAAACCAGAGCTTTTCGAATTCTGGCAAG
GACAGACGTCTCGTTTGCATGATAGGTTGCAATATTCTCCTCAGGAAATC
AACGGAAAACGGGTATGGAAAATCAACCGCTTGTGTCCCTGACTAGTATT
CTCTGCTTCCTCATTGTGAATTCATCATCCATGGTATTCTGCAACTTGTT
GCAGTGAATTCATATAATATGTTTTGAGTGGCAATATGCATGTAACGAAA
TTATAAATTACATATAGGGGTTCAGCGAAATATGTTGGTGCCACTCTTAA
GTATGTTGGAAACCTATGGCGAATAATTATGAGTCAAAGAATACAAATTT
ATTACCACAAACACACTAAATAGGGAATGTAAAACTGGCTTCCTCCCCCT
CCGGTGCGCCCCCCCCCCCCCGCCCCCAACTCGCGGGTGTGTTAGGGTCC
ATATACGATAGGTGCCCAATATAGCTCATGTACAAGACTGGTTGTTAACA
TATATTCTGCTGGCAATTACTCTCTGGATATAAAATATATACAAGTCCCA
CCCTCTAACACGGCAGGCGAGCGCCAGGGGGGGGCGACACTTGGACAAAC
GAACCACTACGTGGGGCCCCTGGCCGGCCCCGCTCGGAGATAACGGCGCT
CTCAACACGCGCCCACGCCCGCACCAGCGGCCCAGGAGACACATCGCCCG
GCCCCTGNCCCGCCGCCGTAGCGGCGGAGGCGCGGGAAACGGGCCAAGAG
AGGCGAACTNAACAGCCCGCG
back to top