EY684660

Overview
NameEY684660
Unique NameEY684660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 3
Query:  258 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMT 719
            F  +   RN     A GF+ Y +FI AA  +   GFGT+      +KE+AAF G    +T+ G  ++  GP A G C+ +E   NQ+              G  ++GRG + L    NY   G+A+  D++N+P+ +  +AT++F+ A+W WMT
Sbjct:   28 FNEMLKNRNDDRCPAKGFYTYDAFIAAANSFP--GFGTTGDDTARKKEIAAFFGQTSHETTGG-SLSADGPFAGGYCFVRE--GNQM--------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMT 162          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = 3
Query:  309 FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMS-PNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKSI 734
            F+   SF+ AA  Y   GF         ++E+AAF  HV  +T               +CY  E++  N  YCD   K  +PC PG  Y+GRG L + WN+NYG  G+ +  D L  P+ +  + T++F+ A+W WM  V  +
Sbjct:  109 FYTRQSFLNAARSYS--GFANDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQV 235          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  309 FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQI-YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKSI 734
            F+   SF+ AA  Y   GF         ++E+AAF  HV  +T               +CY  E++   + YCD + K  +PC PG  Y+GRG L + WNYNYG  G+ +  D L  P+ +  + T++F+ A+W WM  V  +
Sbjct:  112 FYTRQSFLNAAHSYS--GFARDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGASMDYCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQV 238          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 3
Query:  309 FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMS-PNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKSI 734
            F+   SFI AA  +    F  S  +    +E+A    H   +T                CY +E++  ++ YCD++ +  YPC PG  Y GRG + L WNYNYG  G++L +++L  PE + +N T+AF+  +W WM  V+ +
Sbjct:   97 FYTRDSFINAANTFP--NFANSVTR----REIATMFAHFTHETG-------------HFCYIEEINGASRDYCDENNRQ-YPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPV 219          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 45/142 (31.69%), Postives = 70/142 (49.30%), Query Frame = 3
Query:  309 FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKSI 734
            F+   +F++A   Y   GF     ++ G++E+AAF  HV  +T                CY  E++ +  YCD   +  +PC  G  Y+GRG L + WNYNYG  G  +  + L  P  +  +A +AF+ A+W WM  V  +
Sbjct:  105 FYTRSAFLSAVNAYP--GFAHGGTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGV 230          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  300 AVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMS-PNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPV 725
            A GF+   +F+TAA  Y    FG +      ++E+AAF  H   +T                CY +E+  P++ YCD+     +PC  G  Y+GRG L + WN+NYG  G+++  D L  P+ +  +  LAFQ A+W W   V
Sbjct:   90 AKGFYTRDAFLTAAGGYP--SFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNV 216          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.007e-16
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  258 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTP 722
            F  +   RN     A GF+ Y +FI AA  +   GFGTS      +KE+AAF G    +T+ G    +  P   G C+ ++   +                   Y+GRG + L    NY + G A++ D++N+P+ +  +AT++F+ A+W WMTP
Sbjct:   36 FNEMLKNRNDGRCPANGFYTYDAFIAAANSFP--GFGTSGDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTP 169          

HSP 2 Score: 20.4014 bits (41), Expect = 9.007e-16
Identity = 5/13 (38.46%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  740 SAHEPFVGNWKPT 778
            S+H+  +G+W P+
Sbjct:  175 SSHDVIIGSWTPS 187          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 54/182 (29.67%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  228 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPN-QIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKSIQRRRTNPSLGTG 770
            T+SD   T +F +  A +         F+   +F+ A + Y   GFGT       ++E+AA+  HV  +T               LCY +E   +   YC +  +Y  PC P   Y GRG + L WNYNY + G+ L  D LN P+ +  +  ++F+ ++W W+   K +Q    +P+ G G
Sbjct:   45 TVSDIV-TQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYP--GFGTKCTDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIR--KGVQYVILDPNQGFG 206          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = 3
Query:  309 FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMS-PNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKSI 734
            F+   +F++A   Y    FG    +   ++E+AA   H   +T                CY +E+   ++ YCD++    YPC+    YHGRG + L WN+NYG  G A   D L  PE + N+  ++F+ A+W WM  V+ +
Sbjct:   93 FYTRDAFLSALNSYTD--FGRVGSEDDSKREIAAAFAHFTHETG-------------HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPV 220          
BLAST of EY684660 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  306 GFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTP 722
            GF+ Y +FI AA  +    F T+    + ++EVAAFL     +T+ G+  A  GP   G   +                         Y GRG + + +NYNYG  G+A+ VD+L +P+ + ++ T+ F+ A+W WMTP
Sbjct:   18 GFYTYDAFIAAAKSFP--AFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELGSTSD-------------------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTP 129          
The following BLAST results are available for this feature:
BLAST of EY684660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHIB_SOLLC8.448e-1733.12Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI4_ORYSJ1.103e-1633.57Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ1.441e-1633.57Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA1.441e-1632.87Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIA_MAIZE2.458e-1631.69Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ2.458e-1633.57Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC9.007e-1630.97Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_DIOJA4.636e-1529.67Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU4.636e-1530.77Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_AVESA3.005e-1431.65Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-H03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684660 ID=EY684660; Name=EY684660; organism=Citrus sinensis; type=EST; length=860bp
CCACGCGTCCGAATTTCTAAACGTAGCTCATTTAATTTCCTCCCATTCAT
TTAGCTATGAAGCTCAAATGGCAGCTAGTACTTTTTGCAACGGCAATTTT
ATCAGTGCTAGTCATTGTGCATGGCGATGAATCTTCAGTGAAGCCATTAG
TGAAGATTGTGAAGGGCAAGAAATTGTGTGACAAAGGGTGGGAGTGTAAA
GGATGGTCTGAGTATTGCTGCAATCAAACGATATCGGATTACTTTCAGAC
TTACCAATTTGAGAACCTTTTTGCAAAGCGTAACACCCCTGTGGCTCATG
CTGTTGGGTTTTGGGACTACCATTCTTTTATAACCGCTGCTGCTTTATAT
CAGCCTCATGGGTTTGGTACCAGTGCAGGAAAGCTCATGGGTCAAAAGGA
AGTTGCTGCTTTTCTTGGCCACGTTGGAAGCAAAACCTCGTGTGGGTATG
GAGTGGCAACTGGTGGACCATTGGCTTGGGGTCTATGCTACAACAAGGAG
ATGAGTCCTAACCAGATATACTGCGATGATGACTTCAAATACACATATCC
TTGCACTCCTGGAGTTTCATATCATGGCCGCGGTGCCTTGCCCCTCTACT
GGAACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAGTTGATATATTG
AACCACCCAGAGTACATAGAAAACAATGCGACCCTAGCCTTTCAGGCAGC
AATGTGGAGGTGGATGACTCCAGTGAAAAGCATCCAGCGTCGGCGCACGA
ACCCTTCGTTGGGAACTGGAAACCTACCAAGATGACACTTGGGCCAAAGG
GTGCATGGATTCGGCACCACCATGAAGGTCTGGATGGTGACCAAGTTTGG
GGCAAGGGTG
back to top