EY684658

Overview
NameEY684658
Unique NameEY684658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.293e-86
Identity = 152/197 (77.16%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HE LSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.293e-86
Identity = 152/197 (77.16%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKA+HEQLSVAEIT+S FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.293e-86
Identity = 152/197 (77.16%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKA+HEQLSVAEIT+S FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.293e-86
Identity = 152/197 (77.16%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKA+HEQLSVAEIT+S FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.293e-86
Identity = 153/197 (77.66%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITNS FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQ VDWCPT FK GINYQPPTVV GGDLAKV R   M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNSCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVAGGDLAKVQRIVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.995e-86
Identity = 151/197 (76.65%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP++SAEKA+HEQLSVAEIT+S FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIVSAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.911e-86
Identity = 152/197 (77.16%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIE PTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 5.108e-86
Identity = 151/197 (76.65%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERP+YTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQ VDWCPT FK GINYQPPT VPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPSYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 6.671e-86
Identity = 150/197 (76.14%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +Y+P+ISAEKA+HEQLSV+EITN+ FEPS+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+A IKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:   83 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 279
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.713e-86
Identity = 151/197 (76.65%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQ VDWCPT FK GINYQPPT VPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
The following BLAST results are available for this feature:
BLAST of EY684658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBAT_ONCMY2.293e-8677.16Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA8_MOUSE2.293e-8677.16Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN2.293e-8677.16Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN2.293e-8677.16Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA5_CHICK2.293e-8677.66Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA8_RAT2.995e-8676.65Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA_BOMMO3.911e-8677.16Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBA_NOTVI5.108e-8676.65Tubulin alpha chain OS=Notophthalmus viridescens P... [more]
TBA8_CHICK6.671e-8676.14Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA3_HOMAM8.713e-8676.65Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684658 ID=EY684658; Name=EY684658; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGCCATCTATGATATCTGCAGGCGCTCTCTTGACATTGAG
CGCCCCACTTACACCAATCTCAACCGACTTGTCTCTCAGGTGATCTCATC
CCTCACTGCCTCTTTGAGGTTTGATGGAGCTCTGAATGTGGATGTGACTG
AGTTCCAGACCAATTTGGTTCCCTATCCAAGGATCCATTTCATGCTCTCC
TCTTATGCCCCAGTTATCTCTGCAGAGAAGGCATTCCATGAGCAACTTTC
AGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCCATGATGGCCA
AATGTGACCCTCGTCATGGCAAGTATATGGCCTGCTGTTTGATGTATCGT
GGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCACCATCAAGAC
CAAGCGCACAATTCAGNTTGTTGACTGGTGCCCTACTGNATTCAAGTGTG
GTATCAACTATCAGCCACCAACTGTGGTCCCTGGCGGTGACCTTGCCAAG
GTGCACAGGGCTGACGGCATGATTTCCAAATCCGGCAGCGGGGCGGAGAC
GCTGTCGCGCATAAGACATCCGTTCCACCTACCCGTTGCCACAGCCGGCT
TCCGTGCCACAGACAAGCCGCCCACCCAAACCAAACACCCGACCGGACCC
CCACCACCACCGAAACCCCCCAACCGCACCCACCACGAGGAAGGGGCACG
GGGCGGGACACGGAAAGAGCCGACCATAAAAGACGCGACCGTGCCGAGAC
TGAGCAGCCGCAAGGAGGATCGGTCGGCACGCCGGGTGCGCTGGGTGGAC
AGCCCGGGCGTGGCACAGACGAGAGCGCGCCAGGGCGCCAGTCTGACCAC
CGAGGCGAACAGGAGGAGA
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