EY684647

Overview
NameEY684647
Unique NameEY684647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.587e-67
Identity = 113/149 (75.84%), Postives = 137/149 (91.95%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.587e-67
Identity = 113/149 (75.84%), Postives = 137/149 (91.95%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.587e-67
Identity = 113/149 (75.84%), Postives = 137/149 (91.95%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.587e-67
Identity = 113/149 (75.84%), Postives = 137/149 (91.95%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.240e-65
Identity = 109/149 (73.15%), Postives = 139/149 (93.29%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            M+TP+R+RLMRDFK+LQ+DPPAG+SGAP +++I+ W A+IFGP +TP++ GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++ EN+REY +RV++IVEQSW
Sbjct:    1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.420e-61
Identity = 108/152 (71.05%), Postives = 129/152 (84.87%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 544
            MSTP++KRL+RDFKRL  DPP GISGAP  +++M+WNAVIFGP DTP++ GTFKL L F E YPNKPPTV+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPNPNSPAN+EAA ++ EN +EY RRV+  VE SW  D
Sbjct:    1 MSTPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEASWLDD 152          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 7.785e-60
Identity = 107/149 (71.81%), Postives = 126/149 (84.56%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MST AR+RLMRDFKR+QQDPPAG+S +P  +++MLWNAVI GP DTP++ GTFKL L F E YPNKPP V+FVS MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPN  SPAN+EAA++  ENK+EY RRVR+ VE SW
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.607e-59
Identity = 103/149 (69.13%), Postives = 128/149 (85.91%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MST A++RL+RDFKRL  D P GISG+P  ++IM+WNAVIFGP +TP++ G+F+LTL FT+ YPNKPPTVRF+S+MFHPNIYA+G +CLDILQN+WSP YDVAAILTS+QSLL DPNP SPAN +AA++F EN +EY RRV++ VE SW
Sbjct:    1 MSTAAKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.504e-58
Identity = 100/149 (67.11%), Postives = 126/149 (84.56%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MST AR+RLMRDFKR+Q DPPAG+S +P  +++M WNAVI GP DTP++ GTF+L +QF E YPNKPP V+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EA+ ++ +N+REY +RVRE VE+SW
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of EY684647 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.272e-58
Identity = 99/149 (66.44%), Postives = 124/149 (83.22%), Query Frame = 2
Query:   89 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 535
            MST AR+RLMRDFKR+Q DPPAG+S +P  +++M WNAVI GP DTP++ GTF+L +QF E YPNKPP V+F+S MFHPN+YA G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EA+ ++ +N++EY +RVRE VE+SW
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of EY684647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBE2B_RABIT8.587e-6775.84Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE8.587e-6775.84Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN8.587e-6775.84Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN8.587e-6775.84Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC1_CAEEL1.240e-6573.15Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_USTMA2.420e-6171.05Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_SCHPO7.785e-6071.81Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_CRYNE8.607e-5969.13Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_TRIHA2.504e-5867.11Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NECHA4.272e-5866.44Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-F09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684647 ID=EY684647; Name=EY684647; organism=Citrus sinensis; type=EST; length=843bp
CCACGCGTCCGCGAGAAAATCTCGCTGCGATTCTGAAGCTTTTACTGCAA
TCAACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTCCT
GCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCTCC
GGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATG
CTGTTATATTCGGGCCGGATGATACCCCATGGGATGGAGGTACGTTTAAA
TTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCG
CTTTGTTTCTCGAATGTTCCATCCAAATATTTATGCGGATGGAAGCATTT
GCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCA
ATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCC
TGCAAATTCGGAGGCAGCGCGGATGTTTAGCGAGAACAAGCGTGAATACA
ATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGG
CAACTTGTTGGAATGTAGGGAACTTCAAAAGTAGTCCAATGGCTTGTTCT
AAATAACATTTAAGATTCAAAAGGTTGGTGGTGTGAACTCTTGACATGTT
TTATGTTTGTTTCGGCTTATGAGGATGGATGGTTGGCCTCTTATTGTTAA
TTTCTCGGCCTTTGGGACATTGAACTCCACTCGGATTGGGTACATGTATT
TACTTGAGCTTGGGTGCTGATGGGACCAATATGAAGAACGTATGCACGCT
GGGTGCCNAAGAGCACGCGAGAGCGACACGCGGGCGGTAGTGC
back to top