EY684641

Overview
NameEY684641
Unique NameEY684641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684641_ssr806 microsatellite EY684641_ssr806:806..817. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8980 contig Csv1_Contig8980:85..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.560e-31
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 481
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.560e-31
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 481
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.560e-31
Identity = 60/145 (41.38%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ETTARSW 499
            A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +S+Y     ET  +SW
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.327e-30
Identity = 59/145 (40.69%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ETTARSW 499
            A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +S+Y     ET  +SW
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.327e-30
Identity = 59/145 (40.69%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ETTARSW 499
            A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +S+Y     ET  +SW
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.327e-30
Identity = 56/132 (42.42%), Postives = 89/132 (67.42%), Query Frame = 2
Query:   86 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 481
            +R++++ K LQ+DPP   S  P  +++  W+A I GP ++P+  G F +++ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.263e-30
Identity = 60/145 (41.38%), Postives = 87/145 (60.00%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ETTARSW 499
            + KR++++ K L  DPP   S  P A+++  W A I GP D+P+  G F + + F   YP KPP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y      T   SW
Sbjct:    5 SKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEASW 149          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.860e-30
Identity = 66/147 (44.90%), Postives = 95/147 (64.63%), Query Frame = 2
Query:   89 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAM 517
            R+ +EL+ L K+PP          +M   +A I+G   SPY GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K +R+ + + A+ WT+K+A+
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.860e-30
Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ETTARSW 499
            A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  +S+Y     ET  +SW
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of EY684641 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.860e-30
Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   80 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ETTARSWT 502
            A +R++++ K LQ DPP   S  P+  ++  WQA I GP DS + G  F +++ F  +YP   P V F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P   E A +++ ++ +Y     E   +SW+
Sbjct:    5 ARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWS 150          
The following BLAST results are available for this feature:
BLAST of EY684641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2B_HUMAN4.560e-3143.28Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN4.560e-3143.28Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_CANGA4.560e-3141.38Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_YEAST1.327e-3040.69Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO1.327e-3040.69Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC1_CAEEL1.327e-3042.42Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_USTMA2.263e-3041.38Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBE2T_XENLA3.860e-3044.90Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC2_KLULA3.860e-3040.00Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_DICDI3.860e-3041.78Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-F03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684641 ID=EY684641; Name=EY684641; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGTTTTTTTTTTTTTAAACTTTTTTTTGGCAATTTTTTTAC
AAACAACAATTTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTTGAAG
GAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCGCCGGCCC
CGTTGCGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCCCTCCTG
ATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTTCCTCCA
GACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGTCTTCCA
TCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAAAAGAAC
AGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATTTGTTCA
CTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGATTGCCCA
CATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGGAGCTGGA
CCCAGAAGTATGCAATGGGTTAGGTCGCTGCTATCTCTCTGTCTCAAGGG
AGGGCTTTCCCCAGGGCTTTGGTCTTTAAAACTATTTATGTATGAACAAG
AAGTGTGAGATGTCTCCTCATACAAGTGGTACCAGAGGGGAAGAATTATA
ATTAAGGCCTAGAAACAACACATTCACTGCTTTTAATTGTTTGTATGCAA
ATTTATCTTTTCATTGCTTGGACGGTCTCTATTGTCATTAGCATCAACCT
CTTAGCTGGTTTCTAACCAAACCTGGGGCGGGATGGTTTTTAAAAANNNA
ANAANGAAAGAAAGAAAAAAAAAAAGGGGGGGCCGCTCCAAAGGATCCAG
CTT
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