EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEPK (Indole-3-glycerol phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=trpC PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.281e-57
Identity = 116/140 (82.86%), Postives = 119/140 (85.00%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPER 420
            PYQIVEARALGADCVLLIVSALDDVKMAELAA AK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLE T             ITESGI+NRADVELM I+ VYSFLVGE FMRAE PG ELQRLFFPE+
Sbjct:  129 PYQIVEARALGADCVLLIVSALDDVKMAELAATAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLETTLDLLPRIPRDRLAITESGILNRADVELMAINEVYSFLVGEAFMRAEQPGLELQRLFFPEQ 268
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEPG (Indole-3-glycerol phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.281e-57
Identity = 116/140 (82.86%), Postives = 119/140 (85.00%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPER 420
            PYQIVEARALGADCVLLIVSALDDVKMAELAA AK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLE T             ITESGI+NRADVELM I+ VYSFLVGE FMRAE PG ELQRLFFPE+
Sbjct:  129 PYQIVEARALGADCVLLIVSALDDVKMAELAATAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLETTLDLLPRIPRDRLAITESGILNRADVELMAINEVYSFLVGEAFMRAEQPGLELQRLFFPEQ 268
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEP1 (Indole-3-glycerol phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpC PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.281e-57
Identity = 116/140 (82.86%), Postives = 119/140 (85.00%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPER 420
            PYQIVEARALGADCVLLIVSALDDVKMAELAA AK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLE T             ITESGI+NRADVELM I+ VYSFLVGE FMRAE PG ELQRLFFPE+
Sbjct:  129 PYQIVEARALGADCVLLIVSALDDVKMAELAATAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLETTLDLLPRIPRDRLAITESGILNRADVELMAINEVYSFLVGEAFMRAEQPGLELQRLFFPEQ 268
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEAB (Indole-3-glycerol phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 114/150 (76.00%), Postives = 125/150 (83.33%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQIVEARA+GADC+LLIVSALDDV MAELAA AKSVGLDVLVEVHDG ELERALKTLDTPLVG+NNRNLHTFEVSLE T            V+TESGI+NRADVELME+S VY+FLVGE FMRA++PG EL+RLFF ERG  V G+  D
Sbjct:  129 PYQIVEARAIGADCILLIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLPEIPRDRLVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLFFQERGGVVLGADPD 278
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEA8 (Indole-3-glycerol phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=trpC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 114/150 (76.00%), Postives = 125/150 (83.33%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQIVEARA+GADC+LLIVSALDDV MAELAA AKSVGLDVLVEVHDG ELERALKTLDTPLVG+NNRNLHTFEVSLE T            V+TESGI+NRADVELME+S VY+FLVGE FMRA++PG EL+RLFF ERG  V G+  D
Sbjct:  129 PYQIVEARAIGADCILLIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLPEIPRDRLVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLFFQERGGVVLGADPD 278
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEA7 (Indole-3-glycerol phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=trpC PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.070e-56
Identity = 112/150 (74.67%), Postives = 124/150 (82.67%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQIVEARA+GADC+LLIVSALDD+ M ELAA AKSVGLDVLVEVHDG ELERALKTLDTPLVG+NNRNLHTFEVSLE T            V+TESGI+NRADVELME+S VY+FLVGE FMRA++PG EL+RLFF ERG  V G+  D
Sbjct:  129 PYQIVEARAIGADCILLIVSALDDMLMGELAATAKSVGLDVLVEVHDGAELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLPEIPRDRLVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLFFQERGGVVLGADPD 278
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEU5 (Indole-3-glycerol phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=trpC PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPER 420
            PYQ+VEARALGADC+LLIV+ALDD +M ELAAVAK+ GLDVLVEVHDGDELERAL+ L+TPLVG+NNRNLHTFEVSLE T            VITESGI+NRADVELMEI+ VY+FLVGE FMRAE PG ELQRLFFP+R
Sbjct:  129 PYQVVEARALGADCILLIVAALDDARMHELAAVAKAHGLDVLVEVHDGDELERALR-LETPLVGINNRNLHTFEVSLETTLDLLPRVPKDRLVITESGILNRADVELMEINQVYAFLVGEAFMRAEQPGVELQRLFFPDR 267
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_AZOVD (Indole-3-glycerol phosphate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpC PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.770e-51
Identity = 104/138 (75.36%), Postives = 116/138 (84.06%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFP 414
            PYQ+VEARALGADCVLLIV+AL D +M ELAA AK VGLDVLVEVHDG ELERAL+ L+TPL+G+NNRNLHTFEVSLE T            V+TESGI+NRADVELME+SGVY+FLVGE FMRAE PGAEL+RLFFP
Sbjct:  129 PYQVVEARALGADCVLLIVAALGDAQMLELAATAKEVGLDVLVEVHDGTELERALQ-LETPLIGINNRNLHTFEVSLETTLDLLPKVPRERLVVTESGILNRADVELMEVSGVYAFLVGEAFMRAEKPGAELRRLFFP 265
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XANCP (Indole-3-glycerol phosphate synthase OS=Xanthomonas campestris pv. campestris GN=trpC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.718e-38
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIVSAL+D ++A+L+ +A  +GLDVLVEVHD DELERA++ +  PLVG+NNRNL TFEVSL+ T            ++TESGIV  +DV+LM  +GV +FLVGETFMRA  PG  L++LFF
Sbjct:  127 PYQVYEARVLGADCILLIVSALEDQQLADLSGLAMQLGLDVLVEVHDIDELERAVQ-VPVPLVGINNRNLRTFEVSLQTTLDMRAAVPRDRVLVTESGIVTASDVQLMRSNGVNAFLVGETFMRAPEPGEALRQLFF 262
[Close]
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XANC8 (Indole-3-glycerol phosphate synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.718e-38
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 1 
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIVSAL+D ++A+L+ +A  +GLDVLVEVHD DELERA++ +  PLVG+NNRNL TFEVSL+ T            ++TESGIV  +DV+LM  +GV +FLVGETFMRA  PG  L++LFF
Sbjct:  127 PYQVYEARVLGADCILLIVSALEDQQLADLSGLAMQLGLDVLVEVHDIDELERAVQ-VPVPLVGINNRNLRTFEVSLQTTLDMRAAVPRDRVLVTESGIVTASDVQLMRSNGVNAFLVGETFMRAPEPGEALRQLFF 262
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_PSEPK6.281e-5782.86Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEPG6.281e-5782.86Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEP16.281e-5782.86Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEAB1.071e-5676.00Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEA81.071e-5676.00Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEA79.070e-5674.67Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEU59.386e-5376.43Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_AZOVD1.770e-5175.36Indole-3-glycerol phosphate synthase OS=Azotobacte... [more]
TRPC_XANCP1.718e-3859.85Indole-3-glycerol phosphate synthase OS=Xanthomona... [more]
TRPC_XANC81.718e-3859.85Indole-3-glycerol phosphate synthase OS=Xanthomona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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