EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOPB (Indole-3-glycerol phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=trpC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.574e-26
Identity = 62/134 (46.27%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            YQ+VEARA GADC+L+I++ALDD    ++   A ++G+DVL+E+H+ DELERALK L +P++GVNNRNL +FEV+L  +            ++ ESGI   AD+  +E  G+ +FLVGE+ MR  +  A  + L
Sbjct:  128 YQVVEARAHGADCILIIMAALDDAAAQDIEDAAIALGMDVLIEIHNRDELERALK-LRSPMIGVNNRNLRSFEVTLATSEALAPLIPADRLMVGESGIFAPADIARLERVGIATFLVGESLMRQHDVAAATRTL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOPT (Indole-3-glycerol phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            YQ+VEARA GADC+L+I++ALDD +  ++   A  +G+DVL+EVHD  ELERALK L +P+VGVNNRNL TFEV+L  +            ++ ESGI   AD+  +   G+ +FLVGE+ MR ++  A  + L
Sbjct:  128 YQVVEARAHGADCILIIMAALDDAEAKDIEDAAFDLGMDVLLEVHDAPELERALK-LRSPMVGVNNRNLRTFEVTLATSEALAPLIPKDRLMVGESGIFTPADLARLARVGMSTFLVGESLMRQQDVAAATRAL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOP5 (Indole-3-glycerol phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=trpC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGS 441
            YQ+VEARA GADC+L+I++ALDD    ++   A  +G+DVL+E+H+ DELERALK L +P++GVNNRNL TF+V+L  +            ++ ESGI   AD+  +E  G+ +FLVGE+ MR  +  A  + L   +  +  +G+
Sbjct:  128 YQVVEARAHGADCILIIMAALDDATAKDIEDAAIDLGMDVLIEIHNHDELERALK-LRSPMIGVNNRNLRTFDVTLATSEALAPLIPSERLMVGESGIFAPADLARLERVGIATFLVGESLMRQSDVTAATRALLARDAALRPTGT 272          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHIEC (Indole-3-glycerol phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=trpC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 64/142 (45.07%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVA 429
            YQ+ EARA GADC+LLI+++L D +   L   + S+G+DVLVEVHD  E+ERALK L +PL+G+NNRNL TFEV L  +            ++ ESGI   AD + ++ +G+ +FLVGE+ MR ++  A  + L   E  +A
Sbjct:  128 YQVHEARAWGADCILLIMASLTDDEAERLQDESFSLGMDVLVEVHDASEMERALK-LSSPLIGINNRNLRTFEVGLTVSETLASMVPDDRLLVGESGIFTHADCKRLQAAGINTFLVGESLMRKDDVTAATRALLVGEAAIA 268          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_NITWN (Indole-3-glycerol phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=trpC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 62/134 (46.27%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            YQ+VEARA GADC+L+I++ALDD    ++ A A  +G+DVL+E+H+ +EL+RALK L +P++GVNNRNL TFE +LE +            ++ ESGI   AD+  +E  G+ +FLVGE+ MR  +  A  + L
Sbjct:  128 YQVVEARAHGADCILIIMAALDDDAAKDIEATALDLGMDVLLEIHNREELDRALK-LRSPMIGVNNRNLRTFETTLETSEGLAPYIPKERLMVGESGIFTPADLARLERVGISTFLVGESLMRQADVTAATRTL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_AGRT5 (Indole-3-glycerol phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=trpC PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 64/141 (45.39%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGV 426
            YQ+ EARA GADC+LLI+++L D +   L   A ++G+DVL+EVHD +E ERALK L +PL+G+NNRNL TFEV LE +            ++ ESGI    D + +E SG+ +FLVGE+ MR ++  A  + L     G+
Sbjct:  128 YQVHEARAWGADCILLIMASLSDDEAKRLEDEAFALGMDVLIEVHDAEETERALK-LTSPLLGINNRNLRTFEVGLETSEKLAGLVPADKLLVGESGIFTFEDCQRLEKSGISTFLVGESLMRKDDVTAATKALLTGHSGI 267          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_ACIBL (Indole-3-glycerol phosphate synthase OS=Acidobacteria bacterium (strain Ellin345) GN=trpC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            P QIVEARA GAD +LLIV+AL D+ +  L   AK  GLDVL EVHD DEL+RA   L   L+GVNNRNL TF V +EN+             + ESGI +R D++ +  +   +FL+GE+ MRA++P A L+ L
Sbjct:  125 PAQIVEARAYGADAILLIVAALTDLDLRNLRDEAKRYGLDVLCEVHDRDELKRA-ADLGFDLIGVNNRNLKTFRVDIENSLRFAEEFPPNALRVAESGIHSREDIDRLRDAAYSAFLIGESLMRADSPSATLREL 258          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOCA (Indole-3-glycerol phosphate synthase OS=Rhodobacter capsulatus GN=trpC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.489e-26
Identity = 65/136 (47.79%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENT-XXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQ+ EARA GADC+L+I+++++D    EL A A   G+DVL+EVHDG EL+RALK L +PL+GVNNRNL TFEV+L+ T             ++ ESGI  R D+  M   G   FL+GE+ MR  +  A  + L
Sbjct:  124 PYQVAEARAWGADCILIIMASVEDALAVELEAAATGWGMDVLIEVHDGAELDRALKWLKSPLLGVNNRNLKTFEVTLDVTRHVAPVILAEGRELVCESGIFTR-DMAAMAAVGARRFLIGESLMRQADVAAATRAL 258          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PROMM (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.780e-26
Identity = 66/150 (44.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENT-----XXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVS 435
            PYQ+ +ARA GAD  LLIV+ L D  +  L+ VA S+GL+VLVEVHD +ELER L     PL+G+NNR+L TFE  LE T                 +++ESG+ NRAD++ ++  G  + LVGE  MR  +  A LQ+L   + G + S
Sbjct:  152 PYQLYQARAAGADAALLIVAILSDQDLTYLSKVANSLGLNVLVEVHDAEELERVLNLGGFPLIGINNRDLTTFETDLETTETLSQQFATRLQQQGVLLVSESGLFNRADLDRVQAVGAEAVLVGEALMRQSDVCAGLQQLMIGDEGTSNS 301          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_SPHWW (Indole-3-glycerol phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=trpC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.277e-25
Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            P+Q+ EARALGAD +L+IV+ALDD +MAE+ A A   G+D LVEVHD DE +RAL+ L + L+GVNNR+L  F +    T             + ESG+ ++AD++ M   GV  FLVGE+ MR ++  A  +RL
Sbjct:  127 PWQVTEARALGADAILIIVAALDDGQMAEIEAAAIEHGMDALVEVHDADEFDRALR-LRSRLIGVNNRDLRDFTIDFARTYELVGHAPAGCTFVAESGLGSKADLDAMADHGVGCFLVGESLMRQDDLAAATRRL 260          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_RHOPB2.574e-2646.27Indole-3-glycerol phosphate synthase OS=Rhodopseud... [more]
TRPC_RHOPT3.361e-2647.76Indole-3-glycerol phosphate synthase OS=Rhodopseud... [more]
TRPC_RHOP53.361e-2643.15Indole-3-glycerol phosphate synthase OS=Rhodopseud... [more]
TRPC_RHIEC3.361e-2645.07Indole-3-glycerol phosphate synthase OS=Rhizobium ... [more]
TRPC_NITWN5.734e-2646.27Indole-3-glycerol phosphate synthase OS=Nitrobacte... [more]
TRPC_AGRT55.734e-2645.39Indole-3-glycerol phosphate synthase OS=Agrobacter... [more]
TRPC_ACIBL5.734e-2648.89Indole-3-glycerol phosphate synthase OS=Acidobacte... [more]
TRPC_RHOCA7.489e-2647.79Indole-3-glycerol phosphate synthase OS=Rhodobacte... [more]
TRPC_PROMM9.780e-2644.00Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_SPHWW1.277e-2546.67Indole-3-glycerol phosphate synthase OS=Sphingomon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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