EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BRUA2 (Indole-3-glycerol phosphate synthase OS=Brucella abortus (strain 2308) GN=trpC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQ+ EAR+ GADC+L+I++++DD    EL   A ++G+D L+EVHD  E+ERALK L + L+GVNNRNL +FEV+L  +            ++ ESGI    D   +E SG+ +FL+GE+ MR  +  A  + L
Sbjct:  128 PYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALK-LSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRAL 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BRUA1 (Indole-3-glycerol phosphate synthase OS=Brucella abortus (strain S19) GN=trpC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQ+ EAR+ GADC+L+I++++DD    EL   A ++G+D L+EVHD  E+ERALK L + L+GVNNRNL +FEV+L  +            ++ ESGI    D   +E SG+ +FL+GE+ MR  +  A  + L
Sbjct:  128 PYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALK-LSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRAL 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XANP2 (Indole-3-glycerol phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=trpC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.479e-23
Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            YQ+ EARA GADC+L+I++ +DD+   +LA  A + G+D +VEVHD  ELERAL  L   L+G+NNRNL TFE SLE +             I ESGI    DV  +   G+ + LVGE+ MR E+  +   +L
Sbjct:  128 YQVAEARAWGADCILIIMAGVDDLLARDLADAAAAYGMDAIVEVHDDAELERAL-DLPCRLIGINNRNLRTFETSLETSERLAPRVPKDRIAIGESGIFTPQDVARLAKVGIGTILVGESLMRQEDVASATSQL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_SALRD (Indole-3-glycerol phosphate synthase OS=Salinibacter ruber (strain DSM 13855) GN=trpC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.479e-23
Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQ+VEARA+GAD VLLI +ALD  ++AEL A A  +GL  LVEV++ ++L++ +      ++GVNNR+LHTFEV L+N+             + ESG+ +   +  +  +GV   L+GE  MRAE+PG  L RL
Sbjct:  124 PYQLVEARAVGADAVLLIATALDPGQLAELHAAATELGLSCLVEVYEEEDLDK-IDWEQVSVLGVNNRDLHTFEVDLDNSLRIFDQTPKGVGRVAESGLSDPETLVRLRKAGVNGVLIGEHLMRAEHPGEALSRL 257          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHILO (Indole-3-glycerol phosphate synthase OS=Rhizobium loti GN=trpC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAEN 381
            PYQ+ EARA GAD +L+I++++DD   + L A A  +G+D L+EVHD  E +RALK L + L+G+NNRNL TFE SLE +            +++ESGI    D   ++   + +FLVGE+ MR E+
Sbjct:  127 PYQVYEARAWGADAILIIMASVDDALASALEATAFELGMDALIEVHDEAETQRALK-LSSRLIGINNRNLRTFETSLETSERLATMVPADRLLVSESGIFTHDDCLRLQKKDIGTFLVGESLMRQED 252          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOSK (Indole-3-glycerol phosphate synthase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=trpC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMR 372
            YQ+ EARALGADC+L+I++++ D +  EL A A   G+DVLVEVH  DEL RA + L + L+G+NNRNL TFEVSL+ T            +++ESG+    D+  +   G   FL+GE+ MR
Sbjct:  127 YQVAEARALGADCILIIMASVTDSQALELEAAASHWGMDVLVEVHSRDELARA-EHLKSRLIGINNRNLDTFEVSLDVTRDLARRVPEDRLIVSESGLYTPEDLADLARYGARCFLIGESLMR 248          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOS1 (Indole-3-glycerol phosphate synthase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=trpC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMR 372
            YQ+ EARALGADC+L+I++++ D +  EL A A   G+DVLVEVH  DEL RA + L + L+G+NNRNL TFEVSL+ T            +++ESG+    D+  +   G   FL+GE+ MR
Sbjct:  127 YQVAEARALGADCILIIMASVTDSQALELEAAASHWGMDVLVEVHSRDELARA-EHLKSRLIGINNRNLDTFEVSLDVTRDLARRVPEDRLIVSESGLYTPEDLADLARYGARCFLIGESLMR 248          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_NOVAD (Indole-3-glycerol phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=trpC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22
Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            P+Q +EARA+GAD +L+IV+AL D +MAE+ A A   G+D LVEVH+ +E+ERA + L + L+GVNNR+L  F   L  T            ++ ESGI   AD+  +E  G  +FLVGE+ MR  +  A  + L F
Sbjct:  126 PWQCLEARAIGADAILIIVAALSDQQMAEIEAAALEQGMDALVEVHNEEEMERAAR-LRSRLIGVNNRDLKRFVTDLATTERLAPLAPDGTLLVAESGINTHADLLRLEKCGARTFLVGESLMRQADVEAATRGLLF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOS5 (Indole-3-glycerol phosphate synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=trpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.945e-22
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAEN 381
            YQ+ EARALGADC+L+I++++ D +  EL A A   G+DVLVEVH  +EL RA + L + L+G+NNRNL TFEVSL+ T            +++ESG+    D+  +   G   FL+GE+ MR ++
Sbjct:  127 YQVAEARALGADCILIIMASVSDSQALELEAAASQWGMDVLVEVHSREELARA-EHLKSRLIGINNRNLDTFEVSLDVTRDLARRVPEDRLIVSESGLYTPDDLADLARYGARCFLIGESLMRQQD 251          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_CLOTH (Indole-3-glycerol phosphate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=trpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.945e-22
Identity = 57/126 (45.24%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAEN 381
            +QI E+R +GAD +LLIVS L D ++ +   VA  +G+  LVEVHD  ELERAL++    ++G+NNR+L TFEV L+NT            V++ESGI +  D++ ++  GV + L+GETFMRA +
Sbjct:  125 WQIYESRYIGADAILLIVSLLSDEELKKFQIVANILGMQCLVEVHDERELERALES-GARIIGINNRDLRTFEVDLKNTEKLMNRIPNDRVVVSESGIKDTEDLKYLKELGVDAVLIGETFMRARS 249          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_BRUA22.663e-2343.70Indole-3-glycerol phosphate synthase OS=Brucella a... [more]
TRPC_BRUA12.663e-2343.70Indole-3-glycerol phosphate synthase OS=Brucella a... [more]
TRPC_XANP23.479e-2344.78Indole-3-glycerol phosphate synthase OS=Xanthobact... [more]
TRPC_SALRD3.479e-2344.44Indole-3-glycerol phosphate synthase OS=Salinibact... [more]
TRPC_RHILO1.012e-2244.09Indole-3-glycerol phosphate synthase OS=Rhizobium ... [more]
TRPC_RHOSK2.255e-2246.34Indole-3-glycerol phosphate synthase OS=Rhodobacte... [more]
TRPC_RHOS12.255e-2246.34Indole-3-glycerol phosphate synthase OS=Rhodobacte... [more]
TRPC_NOVAD2.255e-2243.80Indole-3-glycerol phosphate synthase OS=Novosphing... [more]
TRPC_RHOS52.945e-2244.44Indole-3-glycerol phosphate synthase OS=Rhodobacte... [more]
TRPC_CLOTH2.945e-2245.24Indole-3-glycerol phosphate synthase OS=Clostridiu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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