EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BORBR (Indole-3-glycerol phosphate synthase OS=Bordetella bronchiseptica GN=trpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 74/135 (54.81%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQI+ ARA+GADCVLLIV+AL   ++ +L  +A  +G+DVLVEVHD  EL+ AL  L TPL+G+NNRNL TFE +L+ T            V+TESGI+   DV LM    V +FLVGE FMRA +PG EL RL
Sbjct:  127 PYQIISARAMGADCVLLIVAALAPAQLRDLETLAIDLGMDVLVEVHDAKELDAAL-ALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKRVVTESGILKPEDVRLMREHDVQAFLVGEAFMRANDPGVELARL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_JANMA (Indole-3-glycerol phosphate synthase OS=Janthinobacterium sp. (strain Marseille) GN=trpC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.840e-32
Identity = 78/136 (57.35%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQ+ EAR+ GADC+LLIV+ALD   MAEL A A  +G++VLVEVH+ +EL  ALK L T L+GVNNRNL TFE SL+ T            VITES IV   DV+ M  + V++FLVGE FMRA +PG EL RLF
Sbjct:  131 PYQLYEARSWGADCILLIVAALDHGLMAELEACAHELGMNVLVEVHNAEELTAALK-LKTSLLGVNNRNLRTFETSLQTTLDLLPRISPDKLVITESAIVTPDDVKKMRDADVHAFLVGEAFMRAPDPGVELGRLF 265          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_CHRVO (Indole-3-glycerol phosphate synthase OS=Chromobacterium violaceum GN=trpC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.840e-32
Identity = 76/138 (55.07%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPE 417
            YQ+ EARA+GADC+LLI +AL+  KM  L A+A  +G+ VLVEVH+ +EL+ AL+ L T LVGVNNRNL TFEVSL  T             +TESGI    DV LM+ SGV++FLVGE FMR   PG  L RLFF +
Sbjct:  128 YQVYEARAMGADCILLIAAALELPKMKALEALANELGMAVLVEVHNEEELDAALQ-LKTELVGVNNRNLRTFEVSLATTLKLLPRITDGRIAVTESGIATVEDVRLMQASGVHTFLVGEAFMREAEPGEALSRLFFAQ 264          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BORPE (Indole-3-glycerol phosphate synthase OS=Bordetella pertussis GN=trpC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.100e-32
Identity = 73/135 (54.07%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQI+ ARA+GADCVLLIV+ L   ++ +L  +A  +G+DVLVEVHD  EL+ AL  L TPL+G+NNRNL TFE +L+ T            V+TESGI+   DV LM    V +FLVGE FMRA +PG EL RL
Sbjct:  127 PYQIISARAMGADCVLLIVATLAPAQLRDLETLAIDLGMDVLVEVHDAKELDAAL-ALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKRVVTESGILKPEDVRLMREHDVQAFLVGEAFMRANDPGVELARL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_POLNA (Indole-3-glycerol phosphate synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.133e-32
Identity = 73/135 (54.07%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ E+R +GADC+LLI + LDD +M  L A+A S+ + VLVEVHD  ELERALK L TPL+G+NNRNL+TFEVSL+ T            ++TESGI    DV+ M  + V +FLVGE FMRA+ PG  L  LF
Sbjct:  128 YQVYESRVMGADCILLIAACLDDAQMKTLEALAMSLDMAVLVEVHDEAELERALK-LRTPLIGINNRNLNTFEVSLDTTLRLMGKVPAERLLVTESGITTPEDVKRMRDARVNAFLVGEAFMRADEPGVALAELF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_AZOSE (Indole-3-glycerol phosphate synthase OS=Azoarcus sp. (strain EbN1) GN=trpC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.035e-31
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            P+Q+ EARA+GAD VLLIV+ALD   M ++ AVA S+G+ VLVE HD  EL+ AL+ L TPLVG+NNRNL TF+VSL+ T            V+TESGI+  ADV LM  + V +FLVGE FMR  +PG  L+ LF
Sbjct:  127 PWQVYEARAMGADAVLLIVAALDLAAMRDMEAVAGSLGMAVLVEAHDAAELDVALQ-LSTPLVGINNRNLRTFDVSLQTTLDLLARVPAGRIVVTESGILAPADVALMRANAVNAFLVGEAFMRVPDPGEGLRSLF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_AZOSB (Indole-3-glycerol phosphate synthase OS=Azoarcus sp. (strain BH72) GN=trpC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.035e-31
Identity = 76/137 (55.47%), Postives = 95/137 (69.34%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENT--XXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EARA+GAD +LLI + L   +M ++ A+A  +G+ VLVEVHDG ELE+ALK L TPLVG+NNRNL TFEVSL+ T              V+TESGI+  ADV LM  +GV +FLVGE FMR  +PGA L+ LF
Sbjct:  128 YQVYEARAMGADAILLIAACLSLAEMQDMEAIAHGLGMGVLVEVHDGAELEQALK-LRTPLVGINNRNLRTFEVSLQTTLGLLPRLAAEADRIVVTESGILAPADVALMRENGVNAFLVGEAFMRVPDPGAGLRALF 263          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_LARHH (Indole-3-glycerol phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=trpC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.471e-31
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXV-ITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EARA+GADC+LLIV+ALD+ ++A+  A+A+ +G+ VLVE HD  EL+RAL+ L +PL+GVNNRNL TF+VSL+ T            + ITESGI    DV  M  +GV SFLVGE FMR  +PGA L  LF
Sbjct:  128 YQVFEARAMGADCILLIVAALDNARLADFEAIARELGMAVLVETHDAAELDRALR-LASPLIGVNNRNLRTFDVSLDTTLSLLPVIQAEGRMAITESGISTPDDVIRMREAGVNSFLVGEAFMREADPGAALAHLF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RHOFD (Indole-3-glycerol phosphate synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.010e-30
Identity = 74/135 (54.81%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQI E+RA GAD VLLI + LDD +M +L A+A+S+ + VLVEVHD  EL RAL+ L TPL+G+NNRNL TFEVSL+ T            ++ ESGI  R DV  M  +GV +FLVGE FMRA +PG  L  LF
Sbjct:  128 YQIYESRACGADAVLLIAAILDDAQMKDLEAIARSLDMAVLVEVHDAPELARALQ-LKTPLIGINNRNLKTFEVSLDTTLTLMRELPADRLLVCESGIHTRDDVLRMGAAGVNAFLVGEAFMRAPDPGLALAELF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_ACIF5 (Indole-3-glycerol phosphate synthase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.010e-30
Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EARA+GAD +LLIV+AL D ++  L A A+S+ L VLVEVHD  EL+RALK L TPL+G+NNR+L  F   +E T            V+TESGI +R +V  +  +GV +FLVGE FMR   PG  LQ LFF
Sbjct:  127 PYQVWEARAIGADAILLIVAALSDAELQSLEATAQSLDLAVLVEVHDAAELQRALK-LRTPLIGINNRDLRRFVTEIETTLKLLPEIPRERIVVTESGIRSREEVATLRAAGVGAFLVGEAFMRTAQPGDALQHLFF 262          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_BORBR1.409e-3254.81Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_JANMA1.840e-3257.35Indole-3-glycerol phosphate synthase OS=Janthinoba... [more]
TRPC_CHRVO1.840e-3255.07Indole-3-glycerol phosphate synthase OS=Chromobact... [more]
TRPC_BORPE4.100e-3254.07Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_POLNA9.133e-3254.07Indole-3-glycerol phosphate synthase OS=Polaromona... [more]
TRPC_AZOSE2.035e-3155.15Indole-3-glycerol phosphate synthase OS=Azoarcus s... [more]
TRPC_AZOSB2.035e-3155.47Indole-3-glycerol phosphate synthase OS=Azoarcus s... [more]
TRPC_LARHH3.471e-3154.41Indole-3-glycerol phosphate synthase OS=Laribacter... [more]
TRPC_RHOFD1.010e-3054.81Indole-3-glycerol phosphate synthase OS=Rhodoferax... [more]
TRPC_ACIF51.010e-3052.55Indole-3-glycerol phosphate synthase OS=Acidithiob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
back to top