EY684593

Overview
NameEY684593
Unique NameEY684593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_CAEEL (Probable cytosolic Fe-S cluster assembly factor oxy-4 OS=Caenorhabditis elegans GN=oxy-4 PE=1 SV=5)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:   16 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            G+ LL+ A  YGF+N+QN+VRK+K +K    +VE+MACP GC NGGGQI+ +     +E +  +E +Y E++   D  +  +   + +EW  +   +  +  + T+Y PV  ++ AQ+  W
Sbjct:  343 GEILLRVAKVYGFRNVQNLVRKMKTKKEKTDYVEIMACPGGCANGGGQIRYETMDEREEKLIKVEALY-EDLPRQDDEETWI--KVREEW--EKLDKNYRNLLFTDYRPVETNV-AQVLKW 457
The following BLAST results are available for this feature:
BLAST of EY684593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NARF_CAEEL7.749e-1335.54Probable cytosolic Fe-S cluster assembly factor ox... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-A05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684593 ID=EY684593; Name=EY684593; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGGGAGGGAAAAACGTTGTTGAAATTTGCCCTATGTTATGG
CTTCCAGAACCTGCAAAACATTGTCAGGAAAGTGAAAATGCGAAAATGCG
ATTATCAATTTGTGGAGGTCATGGCATGCCCTTCAGGTTGCTTGAATGGT
GGAGGTCAGATCAAGCCTAAGCCAGGGCAATCACCGAAGGAGTTGATTAA
GACACTGGAAACCATCTATTTGGAAAATGTAATGCTAGCTGATCCTTTCA
AAAATCCTCTGGTGAGAAGCTTGTATGATGAGTGGCTTGAGCAACCTGGT
TCAGAGAAAGCTAAAAAGCACGTGCACACAGAATACCATCCTGTAGTGAA
AAGTATCACTGCTCAGTTGCATAATTGGTGAAAGCATTTACCATCCCAAC
ACTTGATCGTATACAAATTTGGAACTATAGAACTCTCTTCTTGTGCCCCA
TGCCGTCTCCAAGTTGTTTTAGCAATTTCAGACATGGCACCACAGCGATG
CTGGCCATTTTTTGTCAATCATGGGATTGCATTTGCAGGGGAGTCCAATT
TTGATAGGGTAAACATATATTTATTTACTTCAAAGGTTTTCACTCATGTA
CATACTCTGTATTAGAAATGTTACATATAAAAGAAAGCATTGAGTTAGAC
ACTGATGCGTCATGGCACTTAATTTCATTTCCCTTGGGTCATTTTTTCTT
AGTTGAAAAGGCCCGATAAGGGTCCCTTTGGCTCCTGTACATAAGCATTT
ATTTTGGAAACCTGAAACTCCCCATTTTTGGTAGGGAAAATTGGAATTTT
TGGGGGAATGGTGTGGCCTTGACCCTGGAAAACAAAAAAATGGTCCTTGG
TTGTTCGCCAACCTCCCCCCGGGGGTGAAAGCAT
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