EY684566

Overview
NameEY684566
Unique NameEY684566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP4_BOVIN (Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 71/241 (29.46%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     LSG +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPN----LSGHLLSASDDHTICL-----------------------WDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 7.540e-17
Identity = 72/244 (29.51%), Postives = 110/244 (45.08%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSAL---AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     LSG +L +  DH   L   +A P   K                           + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPN----LSGHLLSASDDHTICLWDISAVPKKGKV--------------------------VDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP7_XENTR (Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.847e-17
Identity = 72/241 (29.88%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  D  PDL L GHQ    + L+        LSG +L +  DH   L           S G               P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  V WSP   ++     T     ++  + KIGEE
Sbjct:  149 LVFDYTKHPSKPDPSG--DCSPDLRLRGHQKEG-YGLSWNSN----LSGHLLSASDDHTVCLW--------DISAG---------------PKEGKVVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVHWSPHNETILASSGTDRRL-NVWDLSKIGEE 352          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBP4A_XENLA (Histone-binding protein RBBP4-A OS=Xenopus laevis GN=rbbp4-A PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.286e-16
Identity = 70/241 (29.05%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  P+L L GHQ    + L+  P     LSG +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPNLRLRGHQKEG-YGLSWNPN----LSGNLLSASDDHTICL-----------------------WDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: LIN53_CAEEL (Probable histone-binding protein lin-53 OS=Caenorhabditis elegans GN=lin-53 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.680e-16
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  315 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            A+  + GHE  VEDV +       F SVGDD  L++WD R+ STP   ++ AH+A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     H+  + KIGE+
Sbjct:  214 AKDVFKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRT-STPGHCID-AHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLR-----MKLHSFESHRDEIFQVQWSPHNETILASSGTDKRL-HVWDLSKIGED 345          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP7_XENLA (Histone-binding protein RBBP7 OS=Xenopus laevis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.194e-16
Identity = 71/241 (29.46%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+        LSG +L +  DH   L           S G               P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  V WSP   ++     T     ++  + KIGEE
Sbjct:  149 LVFDYTKHPSKPDPSG--ECSPDLRLRGHQKEG-YGLSWNSN----LSGHLLSASDDHTVCLW--------DISAG---------------PKEGKVVDAKAVFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVHWSPHNETILASSGTDRRL-NVWDLSKIGEE 352          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP4_DANRE (Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.887e-16
Identity = 69/241 (28.63%), Postives = 106/241 (43.98%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     L   +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECTPDLRLRGHQKEG-YGLSWNPN----LRSCLLSASDDHTICL-----------------------WDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: LIN53_CAEBR (Probable histone-binding protein lin-53 OS=Caenorhabditis briggsae GN=lin-53 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.887e-16
Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  270 SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            +G NG+       + AR  + GHE  VEDV +       F SVGDD  L++WD R+ + P   ++ AH+A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     H+  + KIGE+
Sbjct:  206 AGANGE-------LKAREIFKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIWDLRT-NVPGHAID-AHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLR-----LKLHSFESHRDEIFQVQWSPHNETILASSGTDKRL-HVWDLSKIGED 345          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP7_CHICK (Histone-binding protein RBBP7 OS=Gallus gallus GN=RBBP7 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.383e-16
Identity = 70/241 (29.05%), Postives = 107/241 (44.40%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+        L G +L +  DH   L           S G               P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  V WSP   ++     T     ++  + KIGEE
Sbjct:  148 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNSN----LKGHLLSASDDHTVCLW--------DISAG---------------PKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVHWSPHNETILASSGTDRRL-NVWDLSKIGEE 351          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP7_RAT (Histone-binding protein RBBP7 OS=Rattus norvegicus GN=Rbbp7 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.422e-15
Identity = 71/241 (29.46%), Postives = 107/241 (44.40%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P +    G  +  PDL L GHQ    + L+        LSG +L +  DH   L                  NA         P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  V WSP   ++     T     ++  + KIGEE
Sbjct:  149 LVFDYTKHPAKPDPSG--ECNPDLRLRGHQKEG-YGLSWNSN----LSGHLLSASDDHTVCLW---------------DINAG--------PKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL-NVWDLSKIGEE 352          
The following BLAST results are available for this feature:
BLAST of EY684566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RBBP4_BOVIN3.384e-1729.46Histone-binding protein RBBP4 OS=Bos taurus GN=RBB... [more]
RBBP4_MOUSE7.540e-1729.51Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]
RBBP7_XENTR9.847e-1729.88Histone-binding protein RBBP7 OS=Xenopus tropicali... [more]
RBP4A_XENLA1.286e-1629.05Histone-binding protein RBBP4-A OS=Xenopus laevis ... [more]
LIN53_CAEEL1.680e-1635.71Probable histone-binding protein lin-53 OS=Caenorh... [more]
RBBP7_XENLA2.194e-1629.46Histone-binding protein RBBP7 OS=Xenopus laevis GN... [more]
RBBP4_DANRE4.887e-1628.63Histone-binding protein RBBP4 OS=Danio rerio GN=rb... [more]
LIN53_CAEBR4.887e-1633.55Probable histone-binding protein lin-53 OS=Caenorh... [more]
RBBP7_CHICK6.383e-1629.05Histone-binding protein RBBP7 OS=Gallus gallus GN=... [more]
RBBP7_RAT1.422e-1529.46Histone-binding protein RBBP7 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684566 ID=EY684566; Name=EY684566; organism=Citrus sinensis; type=EST; length=951bp
TCCGACCCACGCGTCCGCTCATTTGGGATGTTGAGGCACAACCTAATCGC
CATGCTGTCTTAGGAGCTGCTGATTCTCGTCCAGATCTGATATTGACCGG
CCATCAAGATAATGCTGAATTTGCTCTGGCCATGTGTCCAACTGAACCCT
ATGTGCTCTCTGGAGTGGTTTTATGGAGCGTCCAAGACCATGTCTCGGCT
TTGGCAGCAGAACCAGGTTCTGCAAAATCTACAGCTTCTGGTGGTGCCAA
CTCTAAAAATGCTTCCAAGAGTGGTGGGAATGGTGATAAACCTCTAGAGA
GCCCTTCTATTGGGGCACGAGGTAAATACCTAGGGCATGAAGACACTGTT
GAAGACGTTCAGTTCTGTCCATCAAGTGCACAGGAATTCTGCAGTGTAGG
TGATGATTCGTGCCTTATACTATGGGATGCCAGATCTGGCTCTACTCCAG
CTGTCAAGGTTGAGAAAGCTCATAATGCTGATATTCATTGTGTTGATTGG
AATCCCCATGATGTGAATCTCATATTGACGGGGTCTGCTGATAACTCTAT
TCATATGTTTGACCGCCGAAAACTCACTTCTGATGGAGTTGGATCACCTA
TTCATAAATTTGAGGGTCATAGTGCTGCTGTCCTTTGTGTACAGTGGTCT
CCTGAAAAGTCATCAGTCTTTTGGAAGTTCTGCACAGGATGGAATTTTAA
ACATCTTGGGATCATGGAAAAGATTGGTGAAGAAACAGAATTATGGTGAT
TTGAAAGTACCCAATTATCGCCCCGGCTTATTCCTTCGACATGCTGGAAC
ATAAAAACAAATTTGTTGAACTTCACTTGGGAAGCAGCTGGTTCCATGGA
GCATTGTAAGTGGGCATGCACAAGGGGAAAACAACCGCAGAGGGTGACCC
CTACCACAACGGACGAGGCACTATGGAGGTGTCCGCCCATAAAAACAATG
C
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