EY684566

Overview
NameEY684566
Unique NameEY684566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.605e-13
Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  327 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA--VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVF 671
            ++GH  +VED+Q+ P+    F S   D+ + +WD R+  + A  +    AH+ D++ ++W+ H    +L+G  D ++ ++D R+  S   GSP+  F+ H A V  V+W P+ S VF
Sbjct:  257 FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINWS-HREPFLLSGGDDGALKVWDLRQFKS---GSPVATFKQHVAPVTSVEWHPQDSGVF 369          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.626e-13
Identity = 52/197 (26.40%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  165 VVLWSVQDHVSALAAEPGSAKSTA--------------------------SGGANSK----NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSS 665
            V +W++ +H+ AL  E  + K TA                          +G  N+     NAS+S    D             + GH ++VED+Q+ PS  + F S   D  + +WD R    PA+ V KAH AD++ + W+ +   L+++G  D S  ++D R    +   SP+  F+ H+  +  ++W+P + S
Sbjct:  218 VYIWNIANHLKALDNETVAPKQTAPLHTISNHSIEGYALDWSPKIAGRLATGDCNNSIFVTNASESTWKTDTQA----------FKGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRK-PKPAITV-KAHTADVNVISWSRNVEYLLVSGCDDGSFRVWDLRAFKDN---SPVSDFKYHTGPITSIEWNPYEES 399          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.510e-12
Identity = 37/117 (31.62%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  327 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVF 671
            ++GH  +VED+Q+ P+    F S   D+ + +WD R+  G    +    AH+ D++ + W+  +   +L+G  D ++ ++D R+  S   GSP+  F+ H A V  V+W P+ S VF
Sbjct:  257 FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRRE-PFLLSGGDDGALKVWDLRQFKS---GSPVATFKQHMAPVTSVEWHPQDSGVF 369          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.510e-12
Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  327 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA--VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVF 671
            ++GH  +VED+Q+ P+    F S   D+ + +WD R+  + A  +    AH+ D++ + W+  +   +L+G  D ++ ++D R+  S   GSP+  F+ H A V  V+W P+ S VF
Sbjct:  257 FVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRRE-PFLLSGGDDGALKIWDLRQFKS---GSPVATFKQHVAPVTSVEWHPQDSGVF 369          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: MSI3_ARATH (WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana GN=MSI3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 57/201 (28.36%), Postives = 85/201 (42.29%), Query Frame = 3
Query:   81 PDLILTGHQDNAEFALAMCPTEPYVLSG-----VVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSV 668
            PDL L GH+            E Y+LSG     + LW V            SA +T                 DK L    +     Y GH+  +EDV +   +   F S GDD  L++WD R+         K H  +I+ + +NP +  ++ T S+D+++ +FD RKLT     +P+H    H   V  V+W P   +V
Sbjct:  161 PDLRLMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDV------------SATAT-----------------DKVLNPMHV-----YEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQMQ--HQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLT-----APLHVLSKHEGEVFQVEWDPNHETV 320          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 37/117 (31.62%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  327 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVF 671
            ++GH  +VED+Q+ P+    F S   D+ + +WD R+  G    +    AH+ D++ + W+  +   +L+G  D ++ ++D R+  S   GSP+  F+ H A V  V+W P+ S VF
Sbjct:  256 FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWSRRE-PFLLSGGDDGTLKVWDLRQFKS---GSPVATFKQHVAPVTSVEWHPQDSGVF 368          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.303e-12
Identity = 57/218 (26.15%), Postives = 93/218 (42.66%), Query Frame = 3
Query:   21 IWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL-TSDGVGSPIHKFEGHSAAVLCVQWSPEKSSV 668
            IWD+         L + DS P ++++  +++  + +    TE Y L     WS           P      +   AN    +K    G +   SP       +L H   VED+Q+ PS    F S   D    +WD R+   T A+ V      D++ + WN    NL+ TG+ +    ++D R L +S  V +P+  F+ H A +  ++W P + SV
Sbjct:  214 IWDIAPH------LRSLDS-PGVMVSRKENSPLYTVNRHKTEGYALD----WS-----------PFEYSLLSGDNANEIFLTKYSNGGWQTDSSP-------FLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLATGADNGVWSVWDLRSLKSSSSVATPVASFKWHRAPIYSIEWHPNEDSV 402          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: MSI2_ARATH (WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.303e-12
Identity = 55/202 (27.23%), Postives = 85/202 (42.08%), Query Frame = 3
Query:   81 PDLILTGHQDNAEFALAMCP-TEPYVLSG-----VVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSV 668
            PDL L GH D   + L+  P  E Y+LSG     + LW V                             S    DK L +  +     Y GHE  + DV +   +   F S G+D  L++WD R+         K H  +++ + +NP +  ++ T S+D+++ +FD RKL      +P+H    H   V  V+W P   +V
Sbjct:  160 PDLRLVGH-DKEGYGLSWSPFKEGYLLSGSQDQKICLWDV-----------------------------SATPQDKVLNAMFV-----YEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQ--HQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKL-----NAPLHVMSSHEGEVFQVEWDPNHETV 319          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: HAT2_SCHPO (Histone acetyltransferase type B subunit 2 OS=Schizosaccharomyces pombe GN=mis16 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 51/152 (33.55%), Postives = 69/152 (45.39%), Query Frame = 3
Query:  297 ESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR-SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTG-----WNFKHLGIMEKIGEE 734
            E+  I    KY  H D V DVQF P       SV DD  L + D R +    A KV +AH+  I+ V  NP +  L+ T SAD ++ ++D R          +H  EGH   V  ++WSP    +     T      W+      +EKIGEE
Sbjct:  221 ETKVISPIAKYHRHTDIVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWDLR-----NPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWD------LEKIGEE 361          
The following BLAST results are available for this feature:
BLAST of EY684566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRWD1_BOVIN6.605e-1332.48Glutamate-rich WD repeat-containing protein 1 OS=B... [more]
GRWD1_DICDI8.626e-1326.40Glutamate-rich WD repeat-containing protein 1 OS=D... [more]
GRWD1_MOUSE2.510e-1231.62Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
GRWD1_HUMAN2.510e-1231.62Glutamate-rich WD repeat-containing protein 1 OS=H... [more]
MSI3_ARATH3.278e-1228.36WD-40 repeat-containing protein MSI3 OS=Arabidopsi... [more]
GRWD1_RAT3.278e-1231.62Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
RRB1_SCHPO7.303e-1226.15Ribosome assembly protein rrb1 OS=Schizosaccharomy... [more]
MSI2_ARATH7.303e-1227.23WD-40 repeat-containing protein MSI2 OS=Arabidopsi... [more]
HAT2_SCHPO6.182e-1133.55Histone acetyltransferase type B subunit 2 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684566 ID=EY684566; Name=EY684566; organism=Citrus sinensis; type=EST; length=951bp
TCCGACCCACGCGTCCGCTCATTTGGGATGTTGAGGCACAACCTAATCGC
CATGCTGTCTTAGGAGCTGCTGATTCTCGTCCAGATCTGATATTGACCGG
CCATCAAGATAATGCTGAATTTGCTCTGGCCATGTGTCCAACTGAACCCT
ATGTGCTCTCTGGAGTGGTTTTATGGAGCGTCCAAGACCATGTCTCGGCT
TTGGCAGCAGAACCAGGTTCTGCAAAATCTACAGCTTCTGGTGGTGCCAA
CTCTAAAAATGCTTCCAAGAGTGGTGGGAATGGTGATAAACCTCTAGAGA
GCCCTTCTATTGGGGCACGAGGTAAATACCTAGGGCATGAAGACACTGTT
GAAGACGTTCAGTTCTGTCCATCAAGTGCACAGGAATTCTGCAGTGTAGG
TGATGATTCGTGCCTTATACTATGGGATGCCAGATCTGGCTCTACTCCAG
CTGTCAAGGTTGAGAAAGCTCATAATGCTGATATTCATTGTGTTGATTGG
AATCCCCATGATGTGAATCTCATATTGACGGGGTCTGCTGATAACTCTAT
TCATATGTTTGACCGCCGAAAACTCACTTCTGATGGAGTTGGATCACCTA
TTCATAAATTTGAGGGTCATAGTGCTGCTGTCCTTTGTGTACAGTGGTCT
CCTGAAAAGTCATCAGTCTTTTGGAAGTTCTGCACAGGATGGAATTTTAA
ACATCTTGGGATCATGGAAAAGATTGGTGAAGAAACAGAATTATGGTGAT
TTGAAAGTACCCAATTATCGCCCCGGCTTATTCCTTCGACATGCTGGAAC
ATAAAAACAAATTTGTTGAACTTCACTTGGGAAGCAGCTGGTTCCATGGA
GCATTGTAAGTGGGCATGCACAAGGGGAAAACAACCGCAGAGGGTGACCC
CTACCACAACGGACGAGGCACTATGGAGGTGTCCGCCCATAAAAACAATG
C
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