EY684565

Overview
NameEY684565
Unique NameEY684565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 64/210 (30.48%), Postives = 102/210 (48.57%), Query Frame = 1
Query:   22 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +I A+ +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HP GG
Sbjct:   46 IITARHRGGG--------HKR---LYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGG 232          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHESW (50S ribosomal protein L2 OS=Shewanella sp. (strain W3-18-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG   +   R      P VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHESR (50S ribosomal protein L2 OS=Shewanella sp. (strain MR-7) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG A     V+P     VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMQAGDKIQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-AKRWRGVRPT----VRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHESM (50S ribosomal protein L2 OS=Shewanella sp. (strain MR-4) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG A     V+P     VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMQAGDKIQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-AKRWRGVRPT----VRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHESA (50S ribosomal protein L2 OS=Shewanella sp. (strain ANA-3) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG A     V+P     VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMQAGDKIQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-AKRWRGVRPT----VRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHEPC (50S ribosomal protein L2 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG   +   R      P VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHEON (50S ribosomal protein L2 OS=Shewanella oneidensis GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG   +   R      P VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMQAGDKIQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_RHOFD (50S ribosomal protein L2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 67/209 (32.06%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   25 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G++V  +E  +G    + R++G  A +++   +    +V++ SG  + I   CRA +GQVA    + + L KAG    +        P VRGV MNPV+HP GG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFLRTKDGIPAKVERIEYDPNRSAHIALVCYADG-----ERRYIIAPRGLEVGASIMSGAEAPIRVGNTLPIRNIPVGSIVHCIELQIGKGAQIVRSAGTSATLLAR--EGIYAQVRMRSGEVRKIHIECRATLGQVANEEHSLRRLGKAGAKRWK-----GIRPTVRGVVMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_RALME (50S ribosomal protein L2 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 73/218 (33.49%), Postives = 108/218 (49.54%), Query Frame = 1
Query:   25 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGGRTPSTWA 672
            I  + KG G     H HH      +R +DF   +++G +   V  + +DP R A +A V F        ++   IA +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG    +        P VRGV MNPV+HP GG    T A
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNDKDG-IAAKVERLEYDPNRSANIALVLFADG-----ERRYIIATKGMVAGQALMNGSEAPIKAGNNLPIRNIPVGTTINNVEILPGKGAQVARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRWR-----GIRPTVRGVVMNPVDHPHGGGEGKTAA 242          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_NEIM0 (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 69/210 (32.86%), Postives = 103/210 (49.05%), Query Frame = 1
Query:   25 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HP GG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEAAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of EY684565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2A_ATRBE8.548e-2030.4850S ribosomal protein L2-A, chloroplastic OS=Atrop... [more]
RL2_SHESW1.116e-1932.8050S ribosomal protein L2 OS=Shewanella sp. (strain... [more]
RL2_SHESR1.116e-1933.5150S ribosomal protein L2 OS=Shewanella sp. (strain... [more]
RL2_SHESM1.116e-1933.5150S ribosomal protein L2 OS=Shewanella sp. (strain... [more]
RL2_SHESA1.116e-1933.5150S ribosomal protein L2 OS=Shewanella sp. (strain... [more]
RL2_SHEPC1.116e-1932.8050S ribosomal protein L2 OS=Shewanella putrefacien... [more]
RL2_SHEON1.116e-1932.8050S ribosomal protein L2 OS=Shewanella oneidensis ... [more]
RL2_RHOFD1.116e-1932.0650S ribosomal protein L2 OS=Rhodoferax ferrireduce... [more]
RL2_RALME1.116e-1933.4950S ribosomal protein L2 OS=Ralstonia metalliduran... [more]
RL2_NEIM01.116e-1932.8650S ribosomal protein L2 OS=Neisseria meningitidis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684565 ID=EY684565; Name=EY684565; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGG
TTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCC
GCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCA
GAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTT
TCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCG
AGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTG
ATGGTTGGTAATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGT
TTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTT
CTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACC
AGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAG
AGCTATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAAAAACCCCTTC
TCAAAGCTGGTAATGCATACCACCAATTCAGAGTGAAGCCGAACTGCTGG
CCTAAGGTGCGTGGTGTGGCCATGAACCCGGTGGAGCATCCTCGTGGAGG
GAGGACCCCCAGCACATGGGCCATGCTAGCACTGTTAGGGGGGATCTTCC
CCCTGCCAGCAAGGTGGGTCTTATTGCACCCAGGAGGATTGGTCGCTTCG
AGGGTGACGGGTGGACTTGGGGCGGGGCGGCGCAAGGATAGTTCGTGGGG
GACGAGAGGCGGTCCTCACGGGATGCTGTCTTTACTTGTGGGGTTCGGCG
CACGGTGGAGAGGTGTTCCACTCCCACTCGGGA
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