EY684565

Overview
NameEY684565
Unique NameEY684565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHEB8 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS185) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG   +   R      P VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHEB5 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG   +   R      P VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SHEB2 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS223) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG   +   R      P VRGVAMNPV+HP GG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIR------PTVRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_RICAH (50S ribosomal protein L2 OS=Rickettsia akari (strain Hartford) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 65/195 (33.33%), Postives = 100/195 (51.28%), Query Frame = 1
Query:   76 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            HR G  +  +R +DF      +  VV  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   R    L KAG N +  +R      P VRGVAMNPV+HP GG
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAVVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVMSSQDADIKIGNCLPLKFIPVGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDRKNINLGKAGRNRWLGWR------PHVRGVAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_PSYIN (50S ribosomal protein L2 OS=Psychromonas ingrahamii (strain 37) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 61/185 (32.97%), Postives = 93/185 (50.27%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   V  + +DP R A +A V +        ++   +A +G+  G  +  G+ A++ VGN LP+R+IP G  V  VE        +AR++G Y+ I++   D     ++L SG  + IP+ CRA IG+V       + L KAG    +        P VRGV MNPV+HP GG
Sbjct:   62 YRIVDFKRNKDGIPAKVERLEYDPNRSANIALVLYSDG-----ERRYILAPKGLVAGDQIISGEDASIKVGNCLPMRNIPVGTTVHAVEMKPAKGAQIARSAGAYSQIVAR--DGAYVTLRLRSGEMRKIPTECRATIGEVGNAEHMLRQLGKAGATRWR-----GVRPTVRGVVMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_POLSJ (50S ribosomal protein L2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 66/209 (31.58%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   25 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG      +      P VRGV MNPV+HP GG
Sbjct:   49 ITVRHKGGG-----HKHH------YRVVDFKRNKDAIPAKVERIEYDPNRTAHIALLCYADG-----ERTYIIAPRGLEVGATLISGSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-----VKRWMGIRPTVRGVVMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_OENOB (50S ribosomal protein L2 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 68/195 (34.87%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   73 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            HH  G   Q+R +DF          V  I +DP R A +A + +         K   +A +G+  G  V  G  A + VGN LP+ +IPEG ++ N+E   G  G LAR++G  A I+  +       ++L SG  ++IP+  RA IG+V   G  E  L+  G A   ++R K    P VRG  MNP +HP GG
Sbjct:   53 HHGGGHKQQYRIIDFKRIKDDKTATVKAIEYDPNRTANIALLVYEDGV-----KSYILAPKGLEAGTKVQSGPDADIKVGNALPLGNIPEGTLIHNIELKPGKGGQLARSAGTSAQILGKDDAGKYVIIRLSSGEVRMIPATSRATIGEV---GNAEHSLISWGKAGRSRWRGKT---PHVRGSVMNPNDHPHGG 236          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_MICAN (50S ribosomal protein L2 OS=Microcystis aeruginosa (strain NIES-843) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 66/196 (33.67%), Postives = 96/196 (48.98%), Query Frame = 1
Query:   70 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            + HR G  +  +R +DF      +   VA I +DP R A +A + ++       +K   IA  G+  G  V  G+ A   VGN LP+  IP G  V N+E   G  G + RA+G +A +++   + D   ++LPS   ++I   C A IG+V         L KAG   H+ +      P VRG  MNPV+HP GG
Sbjct:   51 SRHRGGGHKRLYRIIDFRRDKRDIPAKVAAIEYDPNRNARIALLFYKDG-----EKRYIIAPAGLGVGDTVIAGENAPFEVGNALPLSRIPLGTEVHNIELVPGRGGQMVRAAGGFAQVVA--KEGDYVTIRLPSKEVRMIRRECYATIGKVGNAEARNISLGKAGRTRHRGQ-----RPHVRGSVMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_LACLA (50S ribosomal protein L2 OS=Lactococcus lactis subsp. lactis GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 66/194 (34.02%), Postives = 96/194 (49.48%), Query Frame = 1
Query:   73 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            HH  G   ++R +DF      +   VA I +DP R A +A + + +       K   +A +G+  G  V  G +A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HP GG
Sbjct:   53 HHGGGHKRKYRVIDFKRTTDNVVAKVATIEYDPNRTANIALIVYSNGV-----KSYILAPKGLEVGMTVVSGPEADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRHM-----GIRPTVRGSVMNPNDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 68/205 (33.17%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   43 GAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            G  S  +    HR G    ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V  G+ A +  GN L +++IP G ++ N+E   G  G LARA+G  A I++   +     +KLPSG  ++I   C+A IGQV         + KAG      +      P VRGVAMNPV+HP GG
Sbjct:   42 GRNSYGRVTVRHRGGGHKRRYRIIDFKRDKDGVPARVASIEYDPNRSARIALLHYVDG-----EKRYILAPNKLQVGDTVKSGEDAEIKPGNALKLKNIPVGTIIHNIELKPGKGGQLARAAGTMAQILA--KEGKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAGRKRWLGK-----RPHVRGVAMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of EY684565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SHEB81.904e-1932.8050S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB51.904e-1932.8050S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB21.904e-1932.8050S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_RICAH1.904e-1933.3350S ribosomal protein L2 OS=Rickettsia akari (stra... [more]
RL2_PSYIN1.904e-1932.9750S ribosomal protein L2 OS=Psychromonas ingrahami... [more]
RL2_POLSJ1.904e-1931.5850S ribosomal protein L2 OS=Polaromonas sp. (strai... [more]
RL2_OENOB1.904e-1934.8750S ribosomal protein L2 OS=Oenococcus oeni (strai... [more]
RL2_MICAN1.904e-1933.6750S ribosomal protein L2 OS=Microcystis aeruginosa... [more]
RL2_LACLA1.904e-1934.0250S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_HALOH1.904e-1933.1750S ribosomal protein L2 OS=Halothermothrix orenii... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684565 ID=EY684565; Name=EY684565; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGG
TTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCC
GCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCA
GAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTT
TCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCG
AGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTG
ATGGTTGGTAATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGT
TTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTT
CTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACC
AGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAG
AGCTATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAAAAACCCCTTC
TCAAAGCTGGTAATGCATACCACCAATTCAGAGTGAAGCCGAACTGCTGG
CCTAAGGTGCGTGGTGTGGCCATGAACCCGGTGGAGCATCCTCGTGGAGG
GAGGACCCCCAGCACATGGGCCATGCTAGCACTGTTAGGGGGGATCTTCC
CCCTGCCAGCAAGGTGGGTCTTATTGCACCCAGGAGGATTGGTCGCTTCG
AGGGTGACGGGTGGACTTGGGGCGGGGCGGCGCAAGGATAGTTCGTGGGG
GACGAGAGGCGGTCCTCACGGGATGCTGTCTTTACTTGTGGGGTTCGGCG
CACGGTGGAGAGGTGTTCCACTCCCACTCGGGA
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