EY684565

Overview
NameEY684565
Unique NameEY684565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_EHRCJ (50S ribosomal protein L2 OS=Ehrlichia canis (strain Jake) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCW----PKVRGVAMNPVEHPRGG 651
            +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G+ + ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG          N W    P VRGVAMNP++HP GG
Sbjct:   62 YRIIDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGEGSDILPGNCLMLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGVYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAGR---------NRWLGIRPTVRGVAMNPIDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_CHLTE (50S ribosomal protein L2 OS=Chlorobium tepidum GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 59/185 (31.89%), Postives = 96/185 (51.89%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   VA I +DP R A +A + +        +K   +A + +  G  +  G+K  + VGN +P+++IP G+ V N+E  +G  G +AR++G YAV+ +   + +   +K+PSG  + +   CRA IG +         L KAG +           P+ RG+AMNPV+HP GG
Sbjct:   62 YRIIDFKRNKDNVPAKVAAIEYDPNRSARIALLHYVDG-----EKRYILAPKNLKVGDRIESGEKVDIKVGNTMPLKNIPIGSDVHNIELKIGKGGQIARSAGAYAVLAAR--EGNYATLKMPSGEIRKVRIECRATIGVIGNAEHENISLGKAGRSRWL-----GIRPQTRGMAMNPVDHPMGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_CHLAD (50S ribosomal protein L2 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 68/208 (32.69%), Postives = 101/208 (48.56%), Query Frame = 1
Query:   34 QRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            ++ G  +  +    HR G  +  +R +DF      +   V  I +DP R A +A + +        +K   IA  G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL RA+G  A +++   + D   +++PSG  ++I   C A IGQV         L KAG +    R      P+VRG AMNP +HP GG
Sbjct:   39 KKAGRNNQGRITVRHRGGGHKRFYRIIDFKRDKFGIPAKVQAIEYDPNRSARIALLAYVDG-----EKRYIIAPLGLKVGDTVMSGPNAEIRVGNALPLGAIPLGTQIHNIELEIGRGGVLVRAAGTAAQLMA--KEGDYATIRMPSGEVRMIHLRCMATIGQVGNVDHQNIRLGKAGRSRWLGR-----RPRVRGAAMNPRDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_BUCAP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 57/185 (30.81%), Postives = 94/185 (50.81%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +    +DP R + +A + ++       ++   +A + +  G  V  G+   + +GN LP+++IP G+ + NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++P     VRG AMNPV+HP GG
Sbjct:   62 YRIIDFKRNKDNITASIERFEYDPNRSSNIALILYKDG-----KRNYILAPKNLKVGDTVISGENVPIKIGNSLPIKNIPVGSFIHNVEMRPGKGGQIARSAGSYVQLVA--CDKEYATLRLRSGEMRKTESNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIRPT----VRGTAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_BACV8 (50S ribosomal protein L2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 65/193 (33.68%), Postives = 92/193 (47.67%), Query Frame = 1
Query:   73 HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            H RK    +R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G  A   +GN LP+ +IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG      R      P+ RGV MNPV+HP GG
Sbjct:   58 HKRK----YRLIDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGSTLVSGANAAPEIGNALPLENIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSACKATIGSVGNSDHGLESSGKAGRTRWMGR-----RPRNRGVVMNPVDHPMGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_BACTN (50S ribosomal protein L2 OS=Bacteroides thetaiotaomicron GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   76 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            HRK     R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G+ A   +GN LP+++IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG +  Q R      P+ RGV MNPV+HP GG
Sbjct:   58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLYYADG-----EKRYIIAPNGLQVGATLMSGETAAPEIGNTLPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLERSGKAGRSRWQGR-----RPRNRGVVMNPVDHPMGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_ACIBL (50S ribosomal protein L2 OS=Acidobacteria bacterium (strain Ellin345) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 69/208 (33.17%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   37 RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            R+ AG +   H    H RK     R +DF      +   VA + +DP R A +A + +        +K   +   G+  GQ V  G  A ++VGN LP+R+IP G VV N+E   G    +AR++G  A +++   ++D   +KLPSG  + +   C A IGQV         + KAG             P  RGV MNPV+HP GG
Sbjct:   43 RRNAGDITIWHRGGGHKRK----LRLIDFKRDKSGVPATVATVEYDPNRSANIALLHYADG-----EKRYILHPVGLKVGQKVVSGPDADILVGNALPLRNIPAGTVVHNIELKPGKGAQMARSAGAQAQLVA--KESDYALLKLPSGETRRVLVDCMATIGQVGNLDYENVAIGKAGRTRWM-----GVRPTNRGVVMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_ACHLI (50S ribosomal protein L2 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 63/186 (33.87%), Postives = 90/186 (48.39%), Query Frame = 1
Query:   94 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            ++R +DF      + G V  I +DP R A +A +T+        +K   IA +G+  G  +  G +  + VGN LPV SIP G +V N+E   G  G +AR++G  A I+    +     V+L SG  + I   C+A IG+V         + KAG   H         P VRG  MNP +HP GG
Sbjct:   61 KYRIIDFKRDKDNVPGKVTSIEYDPNRTANIALITYLDG-----EKRYIIAPKGLQVGALIVSGSEIDIKVGNALPVMSIPVGTIVHNIELKPGRGGQIARSAGTSAQILGR--EEKYVLVRLQSGEVRRILGTCKATIGEVGNESHELVRIGKAGRTRHL-----GVRPTVRGSVMNPNDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 61/196 (31.12%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   70 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            T HR G  +  +R + F     Y+ G +  I +DP R A +  + +         K   +   G   G  +  G +  +++GN LP+  +P G  + N+E  +G  G L RA+G  A +I+   +     +KLPSG  ++I   C A +GQV   G  +K L +AG+     +      P VRGV MNP++HP GG
Sbjct:   49 TRHRGGGHKRLYRKISFIRNEKYIYGRIITIEYDPNRNAYICLIHYGDG-----DKRYILHPRGAIIGDTLVSGTEVPIIIGNALPLTDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIA--KEGKLATLKLPSGEVRLISKNCSATVGQVGNVGVNKKSLGRAGSKRWLGK-----RPVVRGVVMNPIDHPHGG 232          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 65/199 (32.66%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   76 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS-IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCW----PKVRGVAMNPVEHPRGG 651
            HR G  +  +R +DF        G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ + +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HP GG
Sbjct:   50 HRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGG 232          
The following BLAST results are available for this feature:
BLAST of EY684565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_EHRCJ1.904e-1934.9250S ribosomal protein L2 OS=Ehrlichia canis (strai... [more]
RL2_CHLTE1.904e-1931.8950S ribosomal protein L2 OS=Chlorobium tepidum GN=... [more]
RL2_CHLAD1.904e-1932.6950S ribosomal protein L2 OS=Chloroflexus aggregans... [more]
RL2_BUCAP1.904e-1930.8150S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BACV81.904e-1933.6850S ribosomal protein L2 OS=Bacteroides vulgatus (... [more]
RL2_BACTN1.904e-1934.3850S ribosomal protein L2 OS=Bacteroides thetaiotao... [more]
RL2_ACIBL1.904e-1933.1750S ribosomal protein L2 OS=Acidobacteria bacteriu... [more]
RL2_ACHLI1.904e-1933.8750S ribosomal protein L2 OS=Acholeplasma laidlawii... [more]
RK2_EPIVI1.904e-1931.1250S ribosomal protein L2, plastid OS=Epifagus virg... [more]
RK2A_LIRTU1.904e-1932.6650S ribosomal protein L2-A, chloroplastic OS=Lirio... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684565 ID=EY684565; Name=EY684565; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGG
TTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCC
GCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCA
GAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTT
TCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCG
AGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTG
ATGGTTGGTAATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGT
TTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTT
CTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACC
AGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAG
AGCTATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAAAAACCCCTTC
TCAAAGCTGGTAATGCATACCACCAATTCAGAGTGAAGCCGAACTGCTGG
CCTAAGGTGCGTGGTGTGGCCATGAACCCGGTGGAGCATCCTCGTGGAGG
GAGGACCCCCAGCACATGGGCCATGCTAGCACTGTTAGGGGGGATCTTCC
CCCTGCCAGCAAGGTGGGTCTTATTGCACCCAGGAGGATTGGTCGCTTCG
AGGGTGACGGGTGGACTTGGGGCGGGGCGGCGCAAGGATAGTTCGTGGGG
GACGAGAGGCGGTCCTCACGGGATGCTGTCTTTACTTGTGGGGTTCGGCG
CACGGTGGAGAGGTGTTCCACTCCCACTCGGGA
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