EY684565

Overview
NameEY684565
Unique NameEY684565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 1
Query:    1 PRVRMGR----VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            PR   GR    +I A  +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HP GG
Sbjct:   35 PRCSKGRNARGIITAGHRGGG--------HKR---LYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGG 231          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 1
Query:    1 PRVRMGR----VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            PR   GR    +I A  +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HP GG
Sbjct:   35 PRCSKGRNARGIITAGHRGGG--------HKR---LYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGG 231          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 1
Query:    1 PRVRMGR----VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            PR   GR    +I A  +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HP GG
Sbjct:   35 PRCSKGRNARGIITAGHRGGG--------HKR---LYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGG 231          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 1
Query:    1 PRVRMGR----VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            PR   GR    +I A  +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HP GG
Sbjct:   35 PRCSKGRNARGIITAGHRGGG--------HKR---LYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGG 231          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 1
Query:    1 PRVRMGR----VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            PR   GR    +I A  +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HP GG
Sbjct:   35 PRCSKGRNARGIITAGHRGGG--------HKR---LYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGG 231          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 64/196 (32.65%), Postives = 97/196 (49.49%), Query Frame = 1
Query:   70 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            + HR G  +  +R +DF      + G +A I +DP R   +    +        +K+  +  +GM  G  V    +A + +GN LP+ ++P G  + NVE   G  G LARA+G  A II+   +     ++LPSG  ++I   C A IGQV       + + KAG+     +      PKVRGV MNP++HP GG
Sbjct:   51 SRHRGGGHKRIYRKIDFLRDKKDIFGRIATIEYDPNRNTFICLTYYEDG-----EKKYILYPQGMRIGDSVVSSTEAPISIGNALPLTNMPLGTAIHNVEITPGKGGQLARAAGAVAKIIA--KEGRLATLRLPSGEVRLISQKCLATIGQVGNSDANNRTIGKAGSKRWLGK-----RPKVRGVVMNPIDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.242e-19
Identity = 60/186 (32.26%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   94 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            ++R +DF      + G V  + +DP R A +A V +        ++   IA +G+  G  +  G  A +  GN LP+R+IP G VV  +E   G    +AR++G    +++    + T R++  SG  + +P+ CRA IG+V+    + +   KAG A     ++P     VRG AMNPV+HP GG
Sbjct:   61 RYRIIDFKRDKDGIPGRVERLEYDPNRSAHIALVLYADG-----ERRYVIAPKGVQAGDQLLSGTNAPIRAGNTLPLRNIPVGTVVHCIEMKPGKGAQMARSAGAAVQLVAREGQHATLRLR--SGEMRKVPADCRATIGEVSNSEHSLRKFGKAG-AKRWLGIRPT----VRGTAMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_THEYD (50S ribosomal protein L2 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.242e-19
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRH-PFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            +R +DF      +   +  I +DP R A +A + +    +RY+      +A +G+  G  +  G    + VGN LP++ IP G ++ N+E      G L R++G  A +++   +     VKLPSG  ++I   C A IGQV+        + KAG   H  R      P VRGVAMNP++HP GG
Sbjct:   62 YRIIDFKRNKHGIPAKIESIQYDPNRSARIALLKYMDGEYRYI------LAPDGLKVGDTIMSGSGIDIKVGNALPLKEIPLGTMIHNIELFPNGGGKLVRSAGTAAQLMA--KEGKYAHVKLPSGEVRLINVNCFATIGQVSNLEHENVIIGKAGRTRHMGR-----RPSVRGVAMNPIDHPLGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.242e-19
Identity = 63/208 (30.29%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   34 QRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCWPKVRGVAMNPVEHPRGG 651
            ++KG  +       HR G  +  +R +DF      +   V  I +DP R A +A V +        +K   +   G+  G  +  G++A   +GN LP+  IP G  + N+E + G  G + R++G +A +++   + D   +KLPS   +++   C A IG+V         L KAG   H  R      P+VRG  MNPV+HP GG
Sbjct:   39 RKKGRNNRGVITCRHRGGGHKRLYRLIDFRRDKRDITAQVTAIEYDPNRNARIALVQYEDG-----EKRYILQPAGLGVGDTIIAGEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGG 234          
BLAST of EY684565 vs. ExPASy Swiss-Prot
Match: RL2_STRU0 (50S ribosomal protein L2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.242e-19
Identity = 71/210 (33.81%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   97 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHQFRVKPNCW----PKVRGVAMNPVEHPRGG---------RTPST-WAMLAL 684
            +R +DF      ++ VV  I +DP R A +A V +         K   IA +G+  GQ +  G +A + +GN LP+ +IP G V+ N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA IG V   G  ++ L+  G A        N W    P VRG  MNP +HP GG         + PST W   AL
Sbjct:   62 YRVIDFKRNKDNVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIISGPEADIKIGNALPLANIPVGTVIHNIEMKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATIGSV---GNEQQSLVNIGKAGR------NRWKGVRPTVRGSVMNPNDHPHGGGEGKAPVGRKAPSTPWGKPAL 255          
The following BLAST results are available for this feature:
BLAST of EY684565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_OENPA3.248e-1931.2250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL3.248e-1931.2250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH3.248e-1931.2250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI3.248e-1931.2250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR3.248e-1931.2250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_ANTFO3.248e-1932.6550S ribosomal protein L2, chloroplastic OS=Anthoce... [more]
RL2_THISH4.242e-1932.2650S ribosomal protein L2 OS=Thioalkalivibrio sp. (... [more]
RL2_THEYD4.242e-1932.8050S ribosomal protein L2 OS=Thermodesulfovibrio ye... [more]
RL2_SYNP24.242e-1930.2950S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_STRU04.242e-1933.8150S ribosomal protein L2 OS=Streptococcus uberis (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684565 ID=EY684565; Name=EY684565; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGG
TTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCC
GCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCA
GAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTT
TCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCG
AGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTG
ATGGTTGGTAATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGT
TTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTT
CTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACC
AGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAG
AGCTATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAAAAACCCCTTC
TCAAAGCTGGTAATGCATACCACCAATTCAGAGTGAAGCCGAACTGCTGG
CCTAAGGTGCGTGGTGTGGCCATGAACCCGGTGGAGCATCCTCGTGGAGG
GAGGACCCCCAGCACATGGGCCATGCTAGCACTGTTAGGGGGGATCTTCC
CCCTGCCAGCAAGGTGGGTCTTATTGCACCCAGGAGGATTGGTCGCTTCG
AGGGTGACGGGTGGACTTGGGGCGGGGCGGCGCAAGGATAGTTCGTGGGG
GACGAGAGGCGGTCCTCACGGGATGCTGTCTTTACTTGTGGGGTTCGGCG
CACGGTGGAGAGGTGTTCCACTCCCACTCGGGA
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