EY684555

Overview
NameEY684555
Unique NameEY684555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length995
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.547e-36
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGS-YNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTY 592
            L GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG  SDG+ Y VP   +YSFP T +N  W +V+GL+I++  ++K+DLTA+EL+EEK+  +
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEKETAF 328          

HSP 2 Score: 55.4546 bits (132), Expect = 1.547e-36
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            V   DVKNVIIWGNHSS+ YPDV+HA V     E  V + +KDD+
Sbjct:  173 VTSDDVKNVIIWGNHSSTQYPDVSHAKVKLHGKEVGVYDALKDDS 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 3.419e-36
Identity = 60/110 (54.55%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTY 592
            L GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMG  SDG SY VP   +YSFP   +N  W  V+GL I++  ++K+DLTA+EL+EEK+  +
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKETAF 328          

HSP 2 Score: 59.6918 bits (143), Expect = 3.419e-36
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            V   DVKNVIIWGNHSS+ YPDVNHA V     E  V E +KDD+
Sbjct:  173 VTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.454e-36
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            L GEFI+TVQ+RGAA+I ARK            DH+ DWVLGT EG +VSMG YSDGSY VP G I+SFP  C NG++TIVQGL +D+  +  ++LT EEL  EK
Sbjct:  220 LQGEFISTVQKRGAAVIAARKLSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPVKCANGKYTIVQGLQMDDLSKNLINLTTEELVAEK 324          

HSP 2 Score: 52.7582 bits (125), Expect = 4.454e-36
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDD 258
            V V DV NVIIWGNHSS+ YPD     +N + G+ P+   +KD+
Sbjct:  174 VNVKDVHNVIIWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDE 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.454e-36
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            L GEFITTVQQRGAA+IKARK           CDH+RD   GTP+G +VSMG  SDG SY +P   +YSFP T +N  W IV+GL I++  ++K+DLTA+EL EEK+
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPDGQFVSMGVISDGNSYGIPEDLMYSFPLTIKNKTWKIVEGLPINDFSREKMDLTAKELHEEKE 325          

HSP 2 Score: 56.225 bits (134), Expect = 4.454e-36
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDD 258
            +  V   DVKNVIIWGNHSS+ YPD +HATVN    +    E VK+D
Sbjct:  170 KLNVASDDVKNVIIWGNHSSTQYPDASHATVNLQGKDVGAFEAVKND 216          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 4.454e-36
Identity = 60/110 (54.55%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTY 592
            L GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMG  SDG SY VP   +YSFP   +N  W  V+GL I++  ++K+DLTA+EL+EEK+  +
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKETAF 328          

HSP 2 Score: 59.6918 bits (143), Expect = 4.454e-36
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            V   DVKNVIIWGNHSS+ YPDVNHA V     E  V E +KDD+
Sbjct:  173 VTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.670e-35
Identity = 56/107 (52.34%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            L G+FI TVQQRGAA+IKARK           CDH+RD   GTP G +VSMG  SDG SY VP   +YSFP   ++  W  V+GL I++  ++K+DLTA+EL+EEK+
Sbjct:  219 LKGDFILTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKTWKFVEGLPINDFSREKMDLTAKELTEEKE 325          

HSP 2 Score: 62.7734 bits (151), Expect = 1.670e-35
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            V  +DVKNVIIWGNHSS+ YPDVNHA VN    E  V E +KDD+
Sbjct:  173 VTSNDVKNVIIWGNHSSTQYPDVNHAKVNVKGKEVGVYEAIKDDS 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.348e-34
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTY 592
            L G FITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG  SDG SY VP   +YSFP T +N  W IV+GL I++  ++K+D+TA+EL +EK+  +
Sbjct:  219 LKGGFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGQFVSMGVISDGNSYGVPEDLMYSFPLTIKNKTWKIVEGLCINDFSREKMDITAKELQDEKETAF 328          

HSP 2 Score: 52.373 bits (124), Expect = 2.348e-34
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDD 258
            +  V   DVKNVIIWGNHSS+ YPD +HA+V     +    E VK+D
Sbjct:  170 KLNVASDDVKNVIIWGNHSSTQYPDASHASVTLQGKDVGAFEAVKND 216          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.349e-34
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            ++I TVQQRGAAIIKAR             DH+R W LGT EG WVSMG YSDGSY +  G IYSFP TC+NG+WTIVQGL +++  + K+  T +EL+EE+D
Sbjct:  219 DYIPTVQQRGAAIIKARGASSAASAANAAVDHMRSWALGTDEGDWVSMGIYSDGSYGIQEGLIYSFPCTCKNGDWTIVQGLEVNDFSRGKMQATEQELAEERD 321          

HSP 2 Score: 44.669 bits (104), Expect = 2.349e-34
Identity = 21/55 (38.18%), Postives = 36/55 (65.45%), Query Frame = 1
Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            V+DVK ++IWGNHSS+ YPD++H  V+   G+  + ++ +D     W  +++ PT
Sbjct:  177 VNDVKKMLIWGNHSSTQYPDLHHCEVD---GKVAIDQVEQD-----WYENDYIPT 223          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.058e-34
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            E+I TV +RGAAII+AR             DH+RDW LGTPEG WVSM   SDGSY +P G IY FP  CRNG++ IVQGL I +  ++K+D TA+EL EE++
Sbjct:  223 EYIPTVAKRGAAIIEARGASSAASAASAAIDHMRDWALGTPEGEWVSMAVPSDGSYGIPEGLIYGFPVRCRNGQYEIVQGLEISDFSRQKMDATAKELEEERE 325          

HSP 2 Score: 50.8322 bits (120), Expect = 3.058e-34
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            +T  PVS +KN+ IWGNHSS+ YPD++ ATVN     +P  +LV      EW    + PT
Sbjct:  176 KTGQPVSAIKNITIWGNHSSTQYPDLSQATVN----GQPALDLVDR----EWYEKEYIPT 227          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.144e-33
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            LN +FI  VQ RGA +I ARK             H+RDW+LGT +G  VSM  YSDGSYNVP G I+SFP TC NG+WTIVQGL I+ S Q+K+D T +EL EEK+
Sbjct:  279 LNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEKE 384          

HSP 2 Score: 41.5874 bits (96), Expect = 1.144e-33
Identity = 20/45 (44.44%), Postives = 25/45 (55.56%), Query Frame = 1
Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGE---KPVRELVKDD 258
            V +V NVIIWGNHS +  PDVNH  +         +P+   V DD
Sbjct:  232 VDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIEPIPSSVNDD 276          
The following BLAST results are available for this feature:
BLAST of EY684555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
MDHC_FELCA1.547e-3654.55Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_MOUSE3.419e-3654.55Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_DICDI4.454e-3657.14Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_XENTR4.454e-3656.07Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_RAT4.454e-3654.55Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_CHICK1.670e-3552.34Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDHC_XENLA2.348e-3453.64Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDH_ALCBS2.349e-3456.31Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]
MDH_DEIGD3.058e-3454.37Malate dehydrogenase OS=Deinococcus geothermalis (... [more]
MDHA_DICDI1.144e-3356.60Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684555 ID=EY684555; Name=EY684555; organism=Citrus sinensis; type=EST; length=995bp
GGGGGGGGGTGAGAGGTGTGNTGTGTAAACGCTTTATATTATTTAACCTT
TGTGTATGTGGGTNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCTCAACCACGCGTCCGCGGACGCGTGTGCCCGTATCTGATGTTAAGAAT
GTGATTATTTGGGGAAATCATTCATCATCTCATTACCCTGATGTCAACCA
TGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCA
AGGATGATGCATGCGTTGAATGGAGAATTCATAACCACAGTCCAACAACG
TGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTG
CTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAG
GGCACCTGGGTCTCCATGGGGGAATACTCTGATGGTTCATACAATGTACC
ACCTGGGCACATTTACTCATTCCCAAAAACCTGCCGCAACGGTGAATGGA
CAATAGTTCAAGGACTCAGCATTGATGAATCCTAACAGAAGAAATTGGAC
TTGACAGCAGAAGAACTCTCCGAGGAAAAAGACCTCACATACCCATGTCC
CCACTTAAATGCCTTCAACCCTTGCAGATTGTGAGTGACCAAGACCTCAA
ACTTAGTCTCAGAAGATAGCAAATATTACAGATTCACAAGAAAAGCCCTG
GTTGGAACTCGAGAGGAACGCATAGAGTAATGTGAAACACCTCCGCAACG
AAAGCTGGGGGCTCGCGGGCTGGAAATTATCGGGAATGGGACACGGGTAG
TAGCCCCCTCCAGGGAATAAGTGGAGATGCGATGATCACTGAACATAATC
TGCTATCCACCGCTCATCACCCCCTTTCCTATTTACAACACAACCAATAA
ACAAGCAAACAATTAATATATCATATAAATTGTCATAAAGAATAGTAAGA
CAAAATAAGATAAAAAATAAAAGGAATAAAAAACAGAGAGGTGTC
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