EY684555

Overview
NameEY684555
Unique NameEY684555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length995
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.861e-20
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            EFI  V  RGA II+ R             DH+RDWV GT    W S    S G+Y +P G     P   RNGEW IV+GL I +  + ++D  A+EL  E++
Sbjct:  222 EFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAERE 322          

HSP 2 Score: 42.743 bits (99), Expect = 2.861e-20
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  136 SDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            ++  N+++WGNHS++ +PD+ +ATV    GEK V +LV  D  VE
Sbjct:  181 AEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLVDHDWYVE 221          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.861e-20
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            EFI  V  RGA II+ R             DH+RDWV GT    W S    S G+Y +P G     P   RNGEW IV+GL I +  + ++D  A+EL  E++
Sbjct:  222 EFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAERE 322          

HSP 2 Score: 42.743 bits (99), Expect = 2.861e-20
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  136 SDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            ++  N+++WGNHS++ +PD+ +ATV    GEK V +LV  D  VE
Sbjct:  181 AEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLVDHDWYVE 221          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.189e-20
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  224 GKSLSVSLSRMMHALNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            G+ ++  +    H  N   I  +QQRGAA+IKAR             DH+R+WVLG+  G WVSMG YS G SY +    ++S P  C +G+W  V GL +    +  L+ T  EL  E++
Sbjct:  202 GEKVAKGVENNWHGDN--LIPIIQQRGAAVIKARGASSAASAASAAIDHMRNWVLGS-GGKWVSMGVYSRGNSYGLDEDIMFSLPVICEDGDWREVAGLELSSFQRAMLEATEAELQAERE 319          

HSP 2 Score: 41.5874 bits (96), Expect = 8.189e-20
Identity = 16/32 (50.00%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  136 SDVKNVIIWGNHSSSHYPDVNHATVNTAAGEK 231
            SDV+ +++WGNHS+S +PD+++A +   AGEK
Sbjct:  176 SDVEKMVVWGNHSASQFPDISYAEI---AGEK 204          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.065e-19
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGS-YNVPPGHIYSFP-KTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDL 586
            L  +FI +VQ+RGAAII+AR             D +RD +L TP G W S    SDG+ Y +  G I+SFP +  +NGE +IV GL  D   ++K+ LT +EL EE+++
Sbjct:  215 LEKDFIESVQKRGAAIIQARGKSSAASAASALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKKNGELSIVSGLKWDAFLEEKIKLTEQELKEEREM 323          

HSP 2 Score: 39.2762 bits (90), Expect = 1.065e-19
Identity = 19/51 (37.25%), Postives = 28/51 (54.90%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +++V   DV  V IWGNHS++  PD     VN    +KPV  ++ D   +E
Sbjct:  170 KSQVSTKDVSCVTIWGNHSATQVPDF----VNAKISQKPVETIIPDRQWLE 216          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.336e-19
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  218 QLGKSLSVSLSRMMHALNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            ++G +  ++L +    +   FI TVQ+RGA +I+AR             DH+R+W  GT +G W +MG  SDGSY +P G IY FP  C+NG   IVQGL I+   + +LD    EL++E D
Sbjct:  199 EIGDTKVINLIKDPIWIENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQELD 320          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_COXBU (Malate dehydrogenase OS=Coxiella burnetii GN=mdh PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.491e-18
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            L  +FI+ +QQRGAA+IKAR             D +   +  TP     S+   + G Y V  G I+SFP    NG  ++++ +  +E  Q+KL  T +EL EE+D
Sbjct:  215 LLNDFISVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREERD 320          

HSP 2 Score: 50.447 bits (119), Expect = 2.491e-18
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKD 255
            V V  VKN+IIWGNHSS+ YPD  HAT++     KP  E+++D
Sbjct:  173 VDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRD 211          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CORDI (Malate dehydrogenase OS=Corynebacterium diphtheriae GN=mdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.492e-18
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  272 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            GEFI  V +RGA II+ R             DH+ DW+ GT +G W +    SDGSY VP G I+ FP    +G+W IVQ L + +  +  +     EL EE++
Sbjct:  217 GEFIPRVAKRGAEIIEVRGKSSAASAASSAIDHMHDWINGT-DGQWRTAAIPSDGSYGVPEGLIFGFPTISEDGQWKIVQDLELSDFQKDGIARNVTELEEERE 319          

HSP 2 Score: 37.7354 bits (86), Expect = 2.492e-18
Identity = 11/29 (37.93%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  136 SDVKNVIIWGNHSSSHYPDVNHATVNTAA 222
            +D++  ++WGNHS+  +PD+ +AT+   A
Sbjct:  177 NDIEKFVVWGNHSAGQFPDITYATIGGEA 205          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_LEPBP (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.212e-18
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            L G+FI+TVQ+RGAAII AR             D + + V  T  G W S   +S+G Y V  G I+ +P      +  IV GL I+   ++K D+T  EL EE++
Sbjct:  215 LKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLIFGYPLKSDGKKVEIVTGLEINAFGKEKFDITHNELKEERN 320          

HSP 2 Score: 43.5134 bits (101), Expect = 4.212e-18
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKD 255
            V V DV NV IWGNHS++ YPD  +A VN     KP  +++ D
Sbjct:  173 VLVKDVSNVAIWGNHSATQYPDFFNAKVN----GKPATDVISD 211          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_LEPBA (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.212e-18
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            L G+FI+TVQ+RGAAII AR             D + + V  T  G W S   +S+G Y V  G I+ +P      +  IV GL I+   ++K D+T  EL EE++
Sbjct:  215 LKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLIFGYPLKSDGKKVEIVTGLEINAFGKEKFDITHNELKEERN 320          

HSP 2 Score: 43.5134 bits (101), Expect = 4.212e-18
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKD 255
            V V DV NV IWGNHS++ YPD  +A VN     KP  +++ D
Sbjct:  173 VLVKDVSNVAIWGNHSATQYPDFFNAKVN----GKPATDVISD 211          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.471e-17
Identity = 36/108 (33.33%), Postives = 54/108 (50.00%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCR-NGEWTIVQGLSIDES*QKKLDLTAEELSEEKDL 586
            L   F+ TVQ RGAA+IKAR             DH+R  +  TP G        ++G+Y V  G I   P T   +G+W+IV+G+ +    + K D   +EL  E+++
Sbjct:  213 LENAFMPTVQNRGAAVIKARGASSAASAANAALDHVRSLITPTPAGDTFCAAVMANGAYGVDAGLIAGMPLTSTGHGDWSIVEGVPMSPFIKGKFDAVLDELRREREM 320          

HSP 2 Score: 44.669 bits (104), Expect = 4.471e-17
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1
Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            V DV NV+IWGNHS++  PD   A +    G KPV E++ D A +E
Sbjct:  173 VIDVTNVVIWGNHSNNQVPDFEFAKI----GGKPVPEVIADAAWLE 214          
The following BLAST results are available for this feature:
BLAST of EY684555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
MDH_CORGL2.861e-2039.81Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORGB2.861e-2039.81Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_DESPS8.189e-2037.19Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH_PARUW1.065e-1942.20Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH_NITEC1.336e-1940.16Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_COXBU2.491e-1834.91Malate dehydrogenase OS=Coxiella burnetii GN=mdh P... [more]
MDH_CORDI2.492e-1838.46Malate dehydrogenase OS=Corynebacterium diphtheria... [more]
MDH_LEPBP4.212e-1837.74Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_LEPBA4.212e-1837.74Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_MAGSM4.471e-1733.33Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684555 ID=EY684555; Name=EY684555; organism=Citrus sinensis; type=EST; length=995bp
GGGGGGGGGTGAGAGGTGTGNTGTGTAAACGCTTTATATTATTTAACCTT
TGTGTATGTGGGTNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCTCAACCACGCGTCCGCGGACGCGTGTGCCCGTATCTGATGTTAAGAAT
GTGATTATTTGGGGAAATCATTCATCATCTCATTACCCTGATGTCAACCA
TGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCA
AGGATGATGCATGCGTTGAATGGAGAATTCATAACCACAGTCCAACAACG
TGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTG
CTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAG
GGCACCTGGGTCTCCATGGGGGAATACTCTGATGGTTCATACAATGTACC
ACCTGGGCACATTTACTCATTCCCAAAAACCTGCCGCAACGGTGAATGGA
CAATAGTTCAAGGACTCAGCATTGATGAATCCTAACAGAAGAAATTGGAC
TTGACAGCAGAAGAACTCTCCGAGGAAAAAGACCTCACATACCCATGTCC
CCACTTAAATGCCTTCAACCCTTGCAGATTGTGAGTGACCAAGACCTCAA
ACTTAGTCTCAGAAGATAGCAAATATTACAGATTCACAAGAAAAGCCCTG
GTTGGAACTCGAGAGGAACGCATAGAGTAATGTGAAACACCTCCGCAACG
AAAGCTGGGGGCTCGCGGGCTGGAAATTATCGGGAATGGGACACGGGTAG
TAGCCCCCTCCAGGGAATAAGTGGAGATGCGATGATCACTGAACATAATC
TGCTATCCACCGCTCATCACCCCCTTTCCTATTTACAACACAACCAATAA
ACAAGCAAACAATTAATATATCATATAAATTGTCATAAAGAATAGTAAGA
CAAAATAAGATAAAAAATAAAAGGAATAAAAAACAGAGAGGTGTC
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