EY684555

Overview
NameEY684555
Unique NameEY684555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length995
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.772e-11
Identity = 36/109 (33.03%), Postives = 52/109 (47.71%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGS-YNVPPGHIYSFPKTCR---NGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            L  EF   VQ RG  +IK               D IR  V  TPEG W S G Y++G+ Y +    ++S P  CR   +G++  V+ +  D+   KK+  + +EL  EK
Sbjct:  321 LEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMP--CRSKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEK 427          

HSP 2 Score: 35.4242 bits (80), Expect = 2.772e-11
Identity = 17/43 (39.53%), Postives = 26/43 (60.47%), Query Frame = 1
Query:  142 VKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            V NV IWGNHS++  PD  +A ++      PV E+++D   +E
Sbjct:  284 VSNVTIWGNHSTTQVPDFLNAKIHGI----PVTEVIRDRKWLE 322          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.678e-11
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGS-YNVPPGHIYSFPKTCR---NGEWTIVQGLSIDES*QKKLDLT-AEELSEEKDLTYPCPHLNAF 616
            L  EF  TVQ+RG  +I+               D IR  V  TPEG W S G Y+ G+ Y +    ++S P  CR   +G++ +   + +D+   +++  + AE L+E+K + +     NAF
Sbjct:  300 LEEEFTLTVQKRGGVLIQKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMP--CRSKGDGDYELASDVLMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAF 419          

HSP 2 Score: 39.2762 bits (90), Expect = 4.678e-11
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  142 VKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            V NV IWGNHS++  PD  +A ++     +PV+E++KD   +E
Sbjct:  263 VSNVTIWGNHSTTQVPDFLNAKID----GRPVKEVIKDTKWLE 301          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.131e-11
Identity = 35/109 (32.11%), Postives = 53/109 (48.62%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGS-YNVPPGHIYSFPKTCR---NGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            L    + +VQ RG+A+I+AR             +  R  +    EG W S G  SD + Y +P   I+ FP  CR    GE+ IV GL  D   + K+ ++ +E+ +EK
Sbjct:  216 LENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDNNPYGLPEDIIFGFP--CRMLGTGEYEIVPGLPWDAFIRGKMQISLDEILQEK 321          

HSP 2 Score: 39.6614 bits (91), Expect = 6.131e-11
Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKD 255
            R  VP+S V  V++WGNHS+   PD   A ++     +P+ E + D
Sbjct:  171 RAEVPLSAVSQVVVWGNHSAKQVPDFTQALIH----GRPIVETIAD 212          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CHLTR (Malate dehydrogenase OS=Chlamydia trachomatis GN=mdh PE=3 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 7.959e-11
Identity = 32/109 (29.36%), Postives = 52/109 (47.71%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGS-YNVPPGHIYSFPKTCR---NGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            L    + +VQ RG+A+I+AR             +  R  +    EG W S G  SD + Y +P   I+ FP  CR    GE+ ++  L  D   + K+ ++ +E+ +EK
Sbjct:  216 LENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLIFGFP--CRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEK 321          

HSP 2 Score: 43.8986 bits (102), Expect = 7.959e-11
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKD 255
            R  VP+S V  V++WGNHS+   PD   A +N    ++P+ E + D
Sbjct:  171 RAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIAD 212          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CHLTA (Malate dehydrogenase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mdh PE=3 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 7.959e-11
Identity = 32/109 (29.36%), Postives = 52/109 (47.71%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGS-YNVPPGHIYSFPKTCR---NGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            L    + +VQ RG+A+I+AR             +  R  +    EG W S G  SD + Y +P   I+ FP  CR    GE+ ++  L  D   + K+ ++ +E+ +EK
Sbjct:  216 LENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLIFGFP--CRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEK 321          

HSP 2 Score: 43.8986 bits (102), Expect = 7.959e-11
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKD 255
            R  VP+S V  V++WGNHS+   PD   A +N    ++P+ E + D
Sbjct:  171 RAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIAD 212          
The following BLAST results are available for this feature:
BLAST of EY684555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
MDHP_FLABI2.772e-1133.03Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP_MAIZE4.678e-1130.33Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDH_CHLMU6.131e-1132.11Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLTR7.959e-1129.36Malate dehydrogenase OS=Chlamydia trachomatis GN=m... [more]
MDH_CHLTA7.959e-1129.36Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684555 ID=EY684555; Name=EY684555; organism=Citrus sinensis; type=EST; length=995bp
GGGGGGGGGTGAGAGGTGTGNTGTGTAAACGCTTTATATTATTTAACCTT
TGTGTATGTGGGTNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCTCAACCACGCGTCCGCGGACGCGTGTGCCCGTATCTGATGTTAAGAAT
GTGATTATTTGGGGAAATCATTCATCATCTCATTACCCTGATGTCAACCA
TGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCA
AGGATGATGCATGCGTTGAATGGAGAATTCATAACCACAGTCCAACAACG
TGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTG
CTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAG
GGCACCTGGGTCTCCATGGGGGAATACTCTGATGGTTCATACAATGTACC
ACCTGGGCACATTTACTCATTCCCAAAAACCTGCCGCAACGGTGAATGGA
CAATAGTTCAAGGACTCAGCATTGATGAATCCTAACAGAAGAAATTGGAC
TTGACAGCAGAAGAACTCTCCGAGGAAAAAGACCTCACATACCCATGTCC
CCACTTAAATGCCTTCAACCCTTGCAGATTGTGAGTGACCAAGACCTCAA
ACTTAGTCTCAGAAGATAGCAAATATTACAGATTCACAAGAAAAGCCCTG
GTTGGAACTCGAGAGGAACGCATAGAGTAATGTGAAACACCTCCGCAACG
AAAGCTGGGGGCTCGCGGGCTGGAAATTATCGGGAATGGGACACGGGTAG
TAGCCCCCTCCAGGGAATAAGTGGAGATGCGATGATCACTGAACATAATC
TGCTATCCACCGCTCATCACCCCCTTTCCTATTTACAACACAACCAATAA
ACAAGCAAACAATTAATATATCATATAAATTGTCATAAAGAATAGTAAGA
CAAAATAAGATAAAAAATAAAAGGAATAAAAAACAGAGAGGTGTC
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