EY684555

Overview
NameEY684555
Unique NameEY684555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length995
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.299e-33
Identity = 60/103 (58.25%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            E+I TVQQRGAAIIKAR              H+RDW LG+PEG WVSMG YSDGSY +  G IYSFP  C+NG+W IVQGLSIDE  Q ++  T  EL  E+D
Sbjct:  217 EYIPTVQQRGAAIIKARGASSAASAANAAIFHMRDWALGSPEGDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLSIDEFSQARMTATETELQGERD 319          

HSP 2 Score: 41.9726 bits (97), Expect = 3.299e-33
Identity = 22/62 (35.48%), Postives = 31/62 (50.00%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE-----WRIHNHSPT 297
            V ++D+  + IWGNHSS+ YPD+ HA             LVK DA ++     W    + PT
Sbjct:  173 VSINDITKMTIWGNHSSTQYPDLYHA-------------LVKGDAAIDKVDSTWYAEEYIPT 221          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.236e-32
Identity = 60/103 (58.25%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            +FI TVQQRGAAIIKAR              H+RDW LGTPE  WVSMG YSDGSY +  G IYSFP  C+NG+W IVQGL+IDE  + K+  T  EL EE+D
Sbjct:  217 DFIPTVQQRGAAIIKARGASSAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLIYSFPCVCKNGDWEIVQGLTIDEFSRAKMTATENELKEERD 319          

HSP 2 Score: 39.2762 bits (90), Expect = 1.236e-32
Identity = 20/57 (35.09%), Postives = 31/57 (54.39%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            V + D+  + IWGNHS++ YPD+ H  V    G+  V ++ KD     W  ++  PT
Sbjct:  173 VTLEDITKMTIWGNHSATQYPDLFHTLVK---GDVAVEQVEKD-----WYENDFIPT 221          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.610e-32
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            E+I TV +RGAAII+AR             DH+RDW LGT EG WVSMG  SDGSY VP G IY FP T ++G++ IVQGL I E  + K+D TA EL EE+D
Sbjct:  219 EYIPTVAKRGAAIIEARGASSAASAASAAIDHMRDWALGTSEGEWVSMGIPSDGSYGVPEGLIYGFPVTVKDGKYQIVQGLEISEFSRGKMDATARELEEERD 321          

HSP 2 Score: 49.6766 bits (117), Expect = 1.610e-32
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELV 249
            +T  PVS +KN+ IWGNHSS+ YPD++ ATV    G +P  +LV
Sbjct:  172 KTGQPVSAIKNITIWGNHSSTQYPDLSQATV----GGRPALDLV 211          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.941e-31
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            ++I TVQQRGAAII AR             +HIRDW LGTP   WVSMG YSDGSY +  G IYSFP  C+NG+W IVQGL I+E  + K+  T +EL EE+D
Sbjct:  217 DYIPTVQQRGAAIIAARGASSAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEERD 319          

HSP 2 Score: 39.6614 bits (91), Expect = 2.941e-31
Identity = 22/60 (36.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            +T   ++++   +IWGNHSS+ YPD++    NT    KP   LV D A   W   ++ PT
Sbjct:  170 KTGTSINNITKALIWGNHSSTQYPDLH----NTLVDGKPALSLV-DQA---WYESDYIPT 221          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.942e-31
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TVQQRGAAIIKAR             DH+RDW LGTPEG W SM   SDGSY +  G IYSFP TCR G++ IV GLS+D+  + ++D TA EL+EE+D
Sbjct:  218 FIPTVQQRGAAIIKARGASSAASAASAAIDHMRDWALGTPEGEWTSMAVPSDGSYGIEAGLIYSFPVTCRGGDYKIVSGLSVDDFSRARMDQTAAELAEERD 319          

HSP 2 Score: 38.891 bits (89), Expect = 2.942e-31
Identity = 14/41 (34.15%), Postives = 27/41 (65.85%), Query Frame = 1
Query:  136 SDVKNVIIWGNHSSSHYPDVNHATV-NTAAGEKPVRELVKD 255
            ++++ + +WGNHS++ YPD++H T+    A ++     VKD
Sbjct:  176 TEIRGLAVWGNHSATQYPDISHCTIQGRPAADQVEHAWVKD 216          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.831e-31
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            +FI TVQQRGAAIIKAR             DHIRDWVLGTPEG W SM   SDGSY +  G IYS+P  CRNG++ IVQ L IDE  ++K+  T +EL EE+D
Sbjct:  217 DFIPTVQQRGAAIIKARGASSAASAASSAIDHIRDWVLGTPEGEWTSMAVPSDGSYGIEKGIIYSYPCVCRNGDYEIVQDLEIDEFSREKMQATEKELVEERD 319          

HSP 2 Score: 39.2762 bits (90), Expect = 3.831e-31
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  136 SDVKNVIIWGNHSSSHYPDVNHATVNTAA 222
            +++KN+IIWGNHS++ YPD++   V   A
Sbjct:  176 TEIKNMIIWGNHSATQYPDISKTKVKGEA 204          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.101e-30
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            ++I TV +RGAAII+AR             DH+ DW LGT +G WVSMG  SDGSY +P G IY FP   ++G++ IVQGL + +  + K+D TA+EL EE+D
Sbjct:  219 DYIPTVAKRGAAIIEARGASSAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEERD 321          

HSP 2 Score: 51.2174 bits (121), Expect = 1.101e-30
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            +T   VSD+KNV IWGNHSS+ YPD++ ATVN     KP  E V       W  +++ PT
Sbjct:  172 KTGAAVSDIKNVTIWGNHSSTQYPDLSQATVN----GKPALEQVDR----TWYENDYIPT 223          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.122e-30
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  272 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QK-KLDLTAEELSEEKD 583
            G +I  VQQRGAAIIKAR              H+R WV+GT E  WVSMG YS+G Y +  G IYSFP TC NG+W+IV G+ +     K K+  T +ELSEE+D
Sbjct:  218 GTYIPEVQQRGAAIIKARGASSAASAANAAIAHVRTWVMGTDENDWVSMGVYSNGEYGIAKGLIYSFPVTCANGDWSIVDGVDVSSDFSKEKMAATEQELSEERD 322          

HSP 2 Score: 46.595 bits (109), Expect = 4.122e-30
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELV 249
            +T   V+DVK +IIWGNHSS+ YPD+  +TVN     KP  +LV
Sbjct:  172 KTDSTVNDVKKMIIWGNHSSTQYPDLTASTVN----GKPALDLV 211          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.100e-30
Identity = 54/106 (50.94%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            +  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM   SDGSY VP G I SFP T ++G+WTIVQGL IDE  + ++D T  EL++E++
Sbjct:  216 IENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADERN 321          

HSP 2 Score: 43.8986 bits (102), Expect = 9.100e-30
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +T   V+D+K + IWGNHS++ YPD+ HA V      K   E+V D   +E
Sbjct:  171 KTGAKVTDIKKMTIWGNHSATQYPDIFHAEVK----GKNAAEVVGDQNWIE 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.100e-30
Identity = 54/105 (51.43%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  272 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QK-KLDLTAEELSEEKD 583
            G +I  VQQRGAAIIKAR              H+R WVLGT E  WVSMG YS+G Y +  G IYSFP TC NG+W+IV G+ +  +  K K+  T +ELSEE+D
Sbjct:  218 GTYIPEVQQRGAAIIKARGASSAASAANAAIAHMRTWVLGTDENDWVSMGVYSNGEYGIAKGLIYSFPCTCTNGDWSIVDGVDVSSAFSKEKMAATEQELSEERD 322          

HSP 2 Score: 45.4394 bits (106), Expect = 9.100e-30
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVN 213
            +T   V+DVK +IIWGNHSS+ YPD+  +TVN
Sbjct:  172 KTDSTVNDVKKMIIWGNHSSTQYPDLTASTVN 203          
The following BLAST results are available for this feature:
BLAST of EY684555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
MDH_TERTT3.299e-3358.25Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_SACD21.236e-3258.25Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDH_DEIDV1.610e-3255.34Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_CELJU2.941e-3155.34Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_HALHL2.942e-3156.86Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_ALHEH3.831e-3157.28Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDH_DEIRA1.101e-3048.54Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_PSYCK4.122e-3050.48Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_MYCPA9.100e-3050.94Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_PSYA29.100e-3051.43Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684555 ID=EY684555; Name=EY684555; organism=Citrus sinensis; type=EST; length=995bp
GGGGGGGGGTGAGAGGTGTGNTGTGTAAACGCTTTATATTATTTAACCTT
TGTGTATGTGGGTNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCTCAACCACGCGTCCGCGGACGCGTGTGCCCGTATCTGATGTTAAGAAT
GTGATTATTTGGGGAAATCATTCATCATCTCATTACCCTGATGTCAACCA
TGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCA
AGGATGATGCATGCGTTGAATGGAGAATTCATAACCACAGTCCAACAACG
TGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTG
CTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAG
GGCACCTGGGTCTCCATGGGGGAATACTCTGATGGTTCATACAATGTACC
ACCTGGGCACATTTACTCATTCCCAAAAACCTGCCGCAACGGTGAATGGA
CAATAGTTCAAGGACTCAGCATTGATGAATCCTAACAGAAGAAATTGGAC
TTGACAGCAGAAGAACTCTCCGAGGAAAAAGACCTCACATACCCATGTCC
CCACTTAAATGCCTTCAACCCTTGCAGATTGTGAGTGACCAAGACCTCAA
ACTTAGTCTCAGAAGATAGCAAATATTACAGATTCACAAGAAAAGCCCTG
GTTGGAACTCGAGAGGAACGCATAGAGTAATGTGAAACACCTCCGCAACG
AAAGCTGGGGGCTCGCGGGCTGGAAATTATCGGGAATGGGACACGGGTAG
TAGCCCCCTCCAGGGAATAAGTGGAGATGCGATGATCACTGAACATAATC
TGCTATCCACCGCTCATCACCCCCTTTCCTATTTACAACACAACCAATAA
ACAAGCAAACAATTAATATATCATATAAATTGTCATAAAGAATAGTAAGA
CAAAATAAGATAAAAAATAAAAGGAATAAAAAACAGAGAGGTGTC
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