EY684555 | Citrus Genome Database

Overview


Name	EY684555
Unique Name	EY684555
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	995

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.434e-29
Identity = 54/106 (50.94%), Postives = 68/106 (64.15%), Query Frame = 2

Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            +  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM   SDGSY VP G I SFP T ++G+WTIVQGL IDE  + ++D T  EL++E++
Sbjct:  216 IENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADERN 321

HSP 2 Score: 41.5874 bits (96), Expect = 4.434e-29
Identity = 20/51 (39.22%), Postives = 29/51 (56.86%), Query Frame = 1

Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +T   V+D+  + IWGNHS++ YPD+ HA V      K   E+V D   +E
Sbjct:  171 KTGAKVTDITKMTIWGNHSATQYPDIFHAEVK----GKNAAEVVGDQNWIE 217

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BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.773e-29
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            FI TV +RGAAII AR             D  RDW+LGTPEG WVSM   SDGSY VP G I SFP T  +G+WTIV+GL ID+  + ++D +  EL++E+
Sbjct:  220 FIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPEGNWVSMAVVSDGSYGVPEGLISSFPVTTTDGDWTIVRGLGIDDFSRGRIDKSTAELADER 320

HSP 2 Score: 46.595 bits (109), Expect = 5.773e-29
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +T   V+D++ + IWGNHS++ YPDV HA +    G K   E+V D A +E
Sbjct:  171 KTGSAVTDIRKMTIWGNHSATQYPDVFHAEI----GGKNAAEVVGDQAWIE 217

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BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.274e-28
Identity = 54/104 (51.92%), Postives = 66/104 (63.46%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGL--SIDES*QKKLDLTAEELSEEKD 583
            +I +VQ+RGAAII+AR              H+R W LGT E  WVSMG YS G Y +  G IYSFP TC NG+W IV+GL  S D S Q+K+  T +ELSEE+D
Sbjct:  218 YIPSVQKRGAAIIEARGASSAASAANAAIAHMRTWALGTDENDWVSMGVYSQGEYGIAKGLIYSFPCTCSNGDWKIVEGLDTSSDFS-QEKMKATEQELSEERD 320

HSP 2 Score: 47.3654 bits (111), Expect = 1.274e-28
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 1

Query:  121 TRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            T   V+DVK +IIWGNHSS+ YPD+   TVN     KP  E V  D    W  +++ P+
Sbjct:  171 TNSTVNDVKKMIIWGNHSSTQYPDLTECTVN----GKPALEQVDRD----WYENSYIPS 221

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-28
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 2

Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            +  EFI TV  RGAAII+AR             D  RDW+LGTPEG WVSM   SDGSY VP G +YS+P T   G W IV+GL +++  ++K+D TA EL +E+
Sbjct:  215 IENEFIPTVAGRGAAIIEARGASSAASAASATIDAARDWLLGTPEGDWVSMAVASDGSYGVPEGLMYSYPVTTSGGNWEIVEGLEVNDFSRRKMDATAAELFDER 319

HSP 2 Score: 42.3578 bits (98), Expect = 2.159e-28
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 1

Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +T   V D++ + +WGNHS++ YPD+ HA V   AG +   E+V D   +E
Sbjct:  170 KTHARVGDIRKMTVWGNHSATQYPDIFHAEV---AG-RNAAEVVNDQDWIE 216

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.810e-28
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DHIRDW LGT  G WV+MG  SDGSY++P G +Y FP TC+NGE+ IV+GL ID   ++K++ T +EL+EEKD
Sbjct:  229 FIPTVGKRGAAIIEARGLSSAASAASAAVDHIRDWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEKD 329

HSP 2 Score: 40.817 bits (94), Expect = 2.810e-28
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 1

Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVK 252
            +T  PV+  K V +WGNHS + YPDV  AT + A     V EL+K
Sbjct:  175 KTGKPVASFKKVAVWGNHSPTMYPDVRFATADGA----KVPELLK 215

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.811e-28
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 2

Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            +  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM   SDGSY VP G I SFP T + G WTIV GL IDE  + ++D +  EL++E+
Sbjct:  216 IEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADER 320