EY684555

Overview
NameEY684555
Unique NameEY684555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length995
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.811e-28
Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFP-KTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            L G+FITTVQQRGAAIIKAR             D +R     TPEG W S+   SDGSY +  G I SFP +T ++G W IVQGL +D   ++K+D T  EL EE+D
Sbjct:  215 LKGDFITTVQQRGAAIIKARGASSAASAASAAVDTVRSLATQTPEGDWYSVAVCSDGSYGIEKGLICSFPVRTTKDGGWEIVQGLPVDAFSREKIDATVNELKEERD 321          

HSP 2 Score: 48.521 bits (114), Expect = 2.811e-28
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEW 273
            V V++V N+ IWGNHSS+ YPD  +A +    G KPV E++KD    EW
Sbjct:  173 VHVTEVTNMAIWGNHSSTQYPDFTNARI----GGKPVTEVIKD---TEW 214          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.765e-28
Identity = 53/102 (51.96%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DHI  WV GTPEG W S    SDGSY VP G I SFP   R+G + IVQGL IDE  ++++D +  ELSEE+D
Sbjct:  219 FIPTVAKRGAAIIEARGASSAASAANAAIDHIHTWVNGTPEGDWTSAAVVSDGSYGVPEGLISSFPVVARDGRYEIVQGLEIDEFSRQRIDASVNELSEERD 320          

HSP 2 Score: 43.8986 bits (102), Expect = 4.765e-28
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVN 213
            V V+D+K + IWGNHS++ YPD+ HA VN
Sbjct:  174 VSVNDIKKLTIWGNHSATQYPDLFHAEVN 202          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-27
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DH+  WV GT EG W SMG  SDGSY VP G I SFP T ++G++ IVQGL I+E  + ++D + +EL+EE+D
Sbjct:  220 FIPTVAKRGAAIIEARGASSAASAANAAIDHVHTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEERD 321          

HSP 2 Score: 45.0542 bits (105), Expect = 1.369e-27
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            +T   VSD+K + IWGNHS++ YPD+ HA +   AG K   E V D+    W      PT
Sbjct:  171 KTGAAVSDIKKLTIWGNHSATQYPDIFHAEI---AG-KNAAETVNDEV---WLADTFIPT 223          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.782e-27
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            FI TV +RGA II AR             D  R W+LGTP   WVSM   SDGSY VP G I SFP T ++G W+IV+GL IDE  + ++D TA EL++E+
Sbjct:  220 FIPTVAKRGATIIDARGASSAASAASASVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTAAELADER 320          

HSP 2 Score: 47.7506 bits (112), Expect = 1.782e-27
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +T V V+D+K + IWGNHS++ YPD+ HA V      K   E+V D A +E
Sbjct:  171 KTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK----GKNAAEVVNDQAWIE 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.782e-27
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            FI TV +RGAAII AR             D  R W+LGTP   WVSM   SDGSY VP G I SFP T ++G W+IV+GL IDE  + ++D T  EL++E+
Sbjct:  220 FIPTVAKRGAAIIDARGASSAASAASATVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTTAELADER 320          

HSP 2 Score: 47.7506 bits (112), Expect = 1.782e-27
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +T V V+D+K + IWGNHS++ YPD+ HA V      K   E+V D A +E
Sbjct:  171 KTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK----GKNAAEVVNDQAWIE 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.019e-27
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            +  EFI TV +RGAAII AR             + +RDW+  TPEG WVSM   SDGSY VP G I SFP T  NG+  IVQGL ID+  + K+D +A+EL++E+D
Sbjct:  214 IENEFIPTVAKRGAAIIDARGASSAASAANATVECMRDWMGSTPEGDWVSMAIPSDGSYGVPEGLISSFPVTITNGKVEIVQGLDIDDFSRAKIDASAKELADERD 319          

HSP 2 Score: 44.2838 bits (103), Expect = 3.019e-27
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEK 231
            +T   V+DV+++ IWGNHSS+ YPDV HA V   AG+K
Sbjct:  170 KTGKTVNDVRHMTIWGNHSSTQYPDVFHAEV---AGQK 204          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.930e-27
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM   S G Y +P G +YSFP T ++G + +V+GL I+E  +K++++TA+EL +E +
Sbjct:  218 FIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEME 319          

HSP 2 Score: 37.3502 bits (85), Expect = 3.930e-27
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEW 273
            +T   V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV     +EW
Sbjct:  170 KTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD----GRPALELVD----MEW 213          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.930e-27
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM   S G Y +P G +YSFP T ++G + +V+GL I+E  +K++++TA+EL +E +
Sbjct:  218 FIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEME 319          

HSP 2 Score: 37.3502 bits (85), Expect = 3.930e-27
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEW 273
            +T   V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV     +EW
Sbjct:  170 KTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD----GRPALELVD----MEW 213          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.930e-27
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM   S G Y +P G +YSFP T ++G + +V+GL I+E  +K++++TA+EL +E +
Sbjct:  218 FIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEME 319          

HSP 2 Score: 37.3502 bits (85), Expect = 3.930e-27
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEW 273
            +T   V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV     +EW
Sbjct:  170 KTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD----GRPALELVD----MEW 213          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_CORJK (Malate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.659e-27
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEK 580
            +N EFI  V +RGA II+ R             DH+RDWV GT EG WVS+   SDGSY +P G ++SFP    +GEW IVQGL I  + Q+++D   +EL EEK
Sbjct:  217 VNDEFIPRVAKRGAEIIEVRGRSSAASAASAALDHMRDWVNGTAEGDWVSVALPSDGSYGIPEGLVFSFPCRSVDGEWEIVQGLEISPAQQERIDANIKELQEEK 321          

HSP 2 Score: 42.743 bits (99), Expect = 6.659e-27
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVREL 246
            V V D+KN+ +WGNHS+S +PDV   T+N   GEK   +L
Sbjct:  176 VAVRDLKNMTVWGNHSASQFPDVAELTLN---GEKVADKL 212          
The following BLAST results are available for this feature:
BLAST of EY684555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
MDH_AKKM82.811e-2849.53Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_SACEN4.765e-2851.96Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_STRGG1.369e-2750.00Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_MYCUA1.782e-2749.50Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM1.782e-2749.50Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_PROAC3.019e-2750.00Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_THETH3.930e-2749.02Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET83.930e-2749.02Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET23.930e-2749.02Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_CORJK6.659e-2747.62Malate dehydrogenase OS=Corynebacterium jeikeium (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684555 ID=EY684555; Name=EY684555; organism=Citrus sinensis; type=EST; length=995bp
GGGGGGGGGTGAGAGGTGTGNTGTGTAAACGCTTTATATTATTTAACCTT
TGTGTATGTGGGTNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCTCAACCACGCGTCCGCGGACGCGTGTGCCCGTATCTGATGTTAAGAAT
GTGATTATTTGGGGAAATCATTCATCATCTCATTACCCTGATGTCAACCA
TGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCA
AGGATGATGCATGCGTTGAATGGAGAATTCATAACCACAGTCCAACAACG
TGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTG
CTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAG
GGCACCTGGGTCTCCATGGGGGAATACTCTGATGGTTCATACAATGTACC
ACCTGGGCACATTTACTCATTCCCAAAAACCTGCCGCAACGGTGAATGGA
CAATAGTTCAAGGACTCAGCATTGATGAATCCTAACAGAAGAAATTGGAC
TTGACAGCAGAAGAACTCTCCGAGGAAAAAGACCTCACATACCCATGTCC
CCACTTAAATGCCTTCAACCCTTGCAGATTGTGAGTGACCAAGACCTCAA
ACTTAGTCTCAGAAGATAGCAAATATTACAGATTCACAAGAAAAGCCCTG
GTTGGAACTCGAGAGGAACGCATAGAGTAATGTGAAACACCTCCGCAACG
AAAGCTGGGGGCTCGCGGGCTGGAAATTATCGGGAATGGGACACGGGTAG
TAGCCCCCTCCAGGGAATAAGTGGAGATGCGATGATCACTGAACATAATC
TGCTATCCACCGCTCATCACCCCCTTTCCTATTTACAACACAACCAATAA
ACAAGCAAACAATTAATATATCATATAAATTGTCATAAAGAATAGTAAGA
CAAAATAAGATAAAAAATAAAAGGAATAAAAAACAGAGAGGTGTC
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